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BaseInfo

ncRNA ID	novel_zma_miR9446
Species	Zea mays
Class	miRNA
Genome position	Chr6:110798902-110799071 [-]
Reference genome	RefGen_v4
Source	SRR4237224
Length	24
Mature sequence(if miRNA)	1 - AUUAGUUCUUAGAAACCAAACACC - 24
Stem-loop(if miRNA)	--                              C  A          CA        CCA     C C           A     C   UGUUUGGUUUCUAGGGACUAAUGUUUAGUC CU UAUUUUAUUU  UUUUAGUU   AAAUU C AGAUAUAGAAA UAAAA U   |||||||||||||||||||||||||||||| || ||||||||||  ||||||||   ||||| | ||||||||||| ||||| U   ACAAACCAAAGAUUCUUGAUUACAAAUCAG GA GUAAAAUAAG  AAAAUCAG   UUUAA G UUUAUAUCUUU AUUUU U CC                              A  A          -A        AUA     C A           G     A
Stem-loop sequence	UGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCUAUAUUUUAUUUCAUUUUAGUUCCAAAAUUCCCAGAUAUAGAAAAUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUAGACUAAAAAGAAUAAAAUGAAGAGACUAAACAUUAGUUCUUAGAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008656457.2	ncRNA:24   CCACAAACCAAAGAUUCUUGAUUA   1   |||||||||||||||||=|||||| targets:1644   GGUGUUUGGUUUCUAAGGACUAAU   1667 Target Full Sequence	1.5	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB163505.1	ncRNA:24   CCACAAACCAAAGAUUCUUGAUUA   1   *||||||||||||||||||||||| targets:1   AGUGUUUGGUUUCUAAGAACUAAU   24 Target Full Sequence	0.0	Sequence 1169 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235174.1	ncRNA:24   CCACAAACCAAAGAUUCUUGAUUA   1   *||||||||||||||||||||||| targets:1   AGUGUUUGGUUUCUAAGAACUAAU   24 Target Full Sequence	0.0	Sequence 1169 from Patent EP2985353	NA	coding protein	psRNATarget
HI403044.1	ncRNA:24   CCACAAACCAAAGAUUCUUGAUUA   1   *||||||||||||||||||||||| targets:1   AGUGUUUGGUUUCUAAGAACUAAU   24 Target Full Sequence	0.0	Sequence 1169 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008655750.2	ncRNA:24   CC-ACAAACCAAAGAUUCUUGAUUA   1   ||-|||||||||||||||=|||||| targets:2413   GGAUGUUUGGUUUCUAAGGACUAAU   2437 Target Full Sequence	1.5	PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944198.1	ncRNA:24   CCACAAACCAAAGAUUCUUGAUUA   1   **|||||||||||||||||||||| targets:426   ACUGUUUGGUUUCUAAGAACUAAU   449 Target Full Sequence	0.0	Zea mays clone 207719 mRNA sequence	NA	coding protein	psRNATarget