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BaseInfo

ncRNA ID	novel_zma_miR9444
Species	Zea mays
Class	miRNA
Genome position	Chr5:188982239-188982378 [+]
Reference genome	RefGen_v4
Source	SRR4237224
Length	21
Mature sequence(if miRNA)	120 - AAUGAAUGCACCAGAUUUAAA - 140
Stem-loop(if miRNA)	--           G  C   C UG   UC    A  C  G       AC           C     AGGG   UAAAUCUGGUG AU CAU U  UAU  AACG CA CA CAAUUUU  GAAGAACCCCU CCACC    G   ||||||||||| || ||| |  |||  |||| || || |||||||  ||||||||||| |||||   AUUUAGACCAC UA GUA A  GUA  UUGU GU GU GUUAAAA  CUUCUUGGGGA GGUGG    A AA           G  A   A GU   GA    C  C  A       CA           A     AAGA
Stem-loop sequence	UAAAUCUGGUGGAUCCAUCUUGUAUUCAACGACACCAGCAAUUUUACGAAGAACCCCUCCCACCAGGGGAAGAAGGUGGAAGGGGUUCUUCACAAAAUUGAUGCUGCUGUUAGAUGUGAAAUGAAUGCACCAGAUUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087533.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||||||| targets:965   UUUAAAUCUGGUGCAUUCAUU   985 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0103K23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544412.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||*|||||| targets:1662   UUUAAAUCUGGUGCCUUCAUU   1682 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103640402 (LOC103640402), mRNA	NA	coding protein	psRNATarget
HI403428.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235558.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2985353	NA	coding protein	psRNATarget
JB163889.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008675079.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ***||||=||||||||||||* targets:1590   ACCAAAUUUGGUGCAUUCAUC   1610 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100384857 (LOC100384857), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675087.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ***||||=||||||||||||* targets:1010   ACCAAAUUUGGUGCAUUCAUC   1030 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100384857 (LOC100384857), transcript variant X3, mRNA	NA	coding protein	psRNATarget