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BaseInfo

ncRNA ID	novel_zma_miR9442
Species	Zea mays
Class	miRNA
Genome position	Chr5:175970640-175970690 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	28 - AAAUAGUGAGAGAUUCUAGCACCC - 51
Stem-loop(if miRNA)	---G        A   -       CAA     GCUAGAAU CUC CACUAUU   U     |||||||| ||| |||||||     CGAUCUUA GAG GUGAUAA   U CCCA        -   A       AUU
Stem-loop sequence	GGCUAGAAUACUCCACUAUUCAAUUUUAAAUAGUGAGAGAUUCUAGCACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166530.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:40   GGGUGCUAGAAUCCCUCACUAUUU   63 Target Full Sequence	1.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:40   GGGUGCUAGAAUCCCUCACUAUUU   63 Target Full Sequence	1.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:40   GGGUGCUAGAAUCCCUCACUAUUU   63 Target Full Sequence	1.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:993   GGGUGCUAGAAUCCCUCACUAUUU   1016 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:826   GGGUGCUAGAAUCCCUCACUAUUU   849 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||||||||||||*|||||||||| targets:826   GGGUGCUAGAAUCCCUCACUAUUU   849 Target Full Sequence	1.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ054947.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*|||||||||||||||||||* targets:26   GGGAGCUAGAAUCUCUCACUAUUC   49 Target Full Sequence	1.0	TSA: Zea mays contig56069, mRNA sequence	NA	coding protein	psRNATarget
XM_020546438.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||-|||||||||||||||||||* targets:3169   GGG-GCUAGAAUCUCUCACUAUUC   3191 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103637688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT019066.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*|||||||||*|||||||||* targets:84   GGGAGCUAGAAUCCCUCACUAUUC   107 Target Full Sequence	2.5	Zea mays clone Contig620.F mRNA sequence	NA	coding protein	psRNATarget
BT069749.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*-||||||||||||||||||* targets:557   GGGA-CUAGAAUCUCUCACUAUUC   579 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0274P05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137986.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*-||||||||||||||||||* targets:702   GGGA-CUAGAAUCUCUCACUAUUC   724 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192793 (LOC100192793), mRNA	NA	coding protein	psRNATarget
BT034869.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*-||||||||||||||||||* targets:702   GGGA-CUAGAAUCUCUCACUAUUC   724 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0024M24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ050474.1	ncRNA:24   CCCACGAUCUUAGAGAGUGAUAAA   1   |||*||||*||||*|||||||||| targets:117   GGGGGCUAUAAUCCCUCACUAUUU   140 Target Full Sequence	2.5	TSA: Zea mays contig51594, mRNA sequence	NA	coding protein	psRNATarget