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BaseInfo

ncRNA ID	novel_zma_miR9440
Species	Zea mays
Class	miRNA
Genome position	Chr5:113953653-113953846 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	22
Mature sequence(if miRNA)	1 - UGUAAUGUAUGCAAGACGGGUG - 22
Stem-loop(if miRNA)	--U       A   -    C    GAG       U    -A   AAG AAA    CC      G          C   GG         GGU     GA    U    GUAAUGU UGC AAGA GGGU   ACGUUCC GGUA  GGU   G   GAUA  GAACUU UCAAGUAGUU AGG  CACCUACAG   UGUCU  UGUC G    ||||||| ||| |||| ||||   ||||||| ||||  |||   |   ||||  |||||| |||||||||| |||  |||||||||   |||||  |||| U    CAUUAUA ACG UUUU CCCG   UGCGAGG CUAU  UCG   C   CUGU  CUUGGA GGUUCAUUAA UCC  GUGGAUGUC   ACAGG  ACAG G AAG       G   G    U    --A       -    GG   --A --A    --      G          -   GG         --A     -A    A
Stem-loop sequence	UGUAAUGUAUGCAAGACGGGUGAGACGUUCCUGGUAAGGUAAGGAAAGAUACCGAACUUGUCAAGUAGUUCAGGGGCACCUACAGGGUUGUCUGAUGUCUGUGAGACAAGGACAACUGUAGGUGGGCCUAAUUACUUGGGAGGUUCUGUCACAGCUGGUAUCGGAGCGUAGCCCUUUUUGGCAGAUAUUACGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108439.1	ncRNA:22   GUGGGCAGAACGUAUGUAAUGU   1   |||||||||||||*|||||||| targets:93   CACCCGUCUUGCAGACAUUACA   114 Target Full Sequence	1.5	TSA: Zea mays contig44098, mRNA sequence	NA	coding protein	psRNATarget
EU944407.1	ncRNA:22   GUGGGCAGAACGUAUGUAAUGU   1   |||||||||||||*|||||||| targets:324   CACCCGUCUUGCAGACAUUACA   345 Target Full Sequence	1.5	Zea mays clone 217991 mRNA sequence	NA	coding protein	psRNATarget
BT038945.1	ncRNA:22   GUGGGCAGAACGUAUGUAAUGU   1   |||||||||||||*|||||||| targets:732   CACCCGUCUUGCAGACAUUACA   753 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0341N05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ068731.1	ncRNA:22   GUGGGCAGAACGUAUGUAAUGU   1   =|||||||*||||*|||||||| targets:6   UACCCGUCAUGCAGACAUUACA   27 Target Full Sequence	2.5	TSA: Zea mays contig04366, mRNA sequence	NA	coding protein	psRNATarget