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BaseInfo

ncRNA ID	novel_zma_miR9429
Species	Zea mays
Class	miRNA
Genome position	Chr10:143073222-143073382 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	138 - AAACAUUCUGGUUUGCAGCCGGCU - 161
Stem-loop(if miRNA)	--U                       A        C                 C     C    ---  G   -    ACAA    UGGCUGCAAACCAGAAUGUUUGC GCCCCUCA AAAAAAUGAGGAUUGAC CCACC GCAG   CA CAA UAAC    C    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||   || ||| ||||    U    GCCGACGUUUGGUCUUACAAACG UGGGGAGU UUUUUUACUCCUAACUG GGUGG CGUC   GU GUU AUUG    A UCG                       A        A                 A     A    CAG  G   U    CAAA
Stem-loop sequence	UUGGCUGCAAACCAGAAUGUUUGCAGCCCCUCACAAAAAAUGAGGAUUGACCCCACCCGCAGCAGCAAUAACACAACUAAAACGUUAUUUGGUGGACCUGCAGGUGGAGUCAAUCCUCAUUUUUUAUGAGGGGUAGCAAACAUUCUGGUUUGCAGCCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137162.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
BT033928.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2497   AGCCCGCUGCAAAACAGAAUGUUU   2520 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2500   AGCCCGCUGCAAAACAGAAUGUUU   2523 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001151499.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   =|*|*|||||||||||||*||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278117 (LOC100278117), mRNA	NA	coding protein	psRNATarget
EU972005.1	ncRNA:24   UCGGCCGACGUUUGGUCUUACAAA   1   =|*|*|||||||||||||*||||| targets:661   GGACUGCUGCAAACCAGACUGUUU   684 Target Full Sequence	1.5	Zea mays clone 373333 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget