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BaseInfo

ncRNA ID novel_zma_miR9428
Species Zea mays
Class miRNA
Genome position Chr10:142763339-142763407 [+]
Reference genome RefGen_v4
Source SRR4237223
Length 24
Mature sequence(if miRNA) 46 - AACUGGAACAGAACGACUCCGUUC - 69
Stem-loop(if miRNA) --UU      A   C          CU    AAC
    GGAGUC UUC GUUCUAGUUU  UUGU   C
    |||||| ||| ||||||||||  ||||   A
    CCUCAG AAG CAAGGUCAAA  AACG   A
CUUG      C   A          AC    ACA
Stem-loop sequence UUGGAGUCAUUCCGUUCUAGUUUCUUUGUAACCAAACAGCAACAAAACUGGAACAGAACGACUCCGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087211.1
ncRNA:24   CUUGCCUCAGCAAGACAAGGUCAA   1
  |||||*||*|||||||||||||||
targets:503   GAACGAAGCCGUUCUGUUCCAGUU   526

2.0 Zea mays full-length cDNA clone ZM_BFb0001A11 mRNA, complete cds NA coding protein psRNATarget
XM_020542520.1
ncRNA:24   CUUGCCUCAGCAAGACAAGGUCAA   1
  |||||*||*|||||||||||||||
targets:1501   GAACGAAGCCGUUCUGUUCCAGUU   1524

2.0 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA NA coding protein psRNATarget