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BaseInfo

ncRNA ID	novel_zma_miR9427
Species	Zea mays
Class	miRNA
Genome position	Chr5:214946745-214946919 [-]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	152 - AUUCAAACUACACUCUACAAACAG - 175
Stem-loop(if miRNA)	--                            U       CG     C A           A    U                AAC  C   AUUCAAACUACACUCUACAAACAGUGCG UGUAUAG  CAAAA G UGCAAAACAGU UUUU GGUGAUCAUGUGGGUG   UG U   |||||||||||||||||||||||||||| |||||||  ||||| | ||||||||||| |||| ||||||||||||||||   || A   UAAGUUUGAUGUGAGAUGUUUGUCACGU ACAUGUU  GUUUU C ACGUUUUGUCA AAAA UCACUGGUAUACUCAC   AC U UA                            U       AU     A C           C    C                GUU  A
Stem-loop sequence	AUUCAAACUACACUCUACAAACAGUGCGUUGUAUAGCGCAAAACGAUGCAAAACAGUAUUUUUGGUGAUCAUGUGGGUGAACUGCUAUACAUUGCACUCAUAUGGUCACUCAAAACACUGUUUUGCACCAUUUUGUAUUGUACAUUGCACUGUUUGUAGAGUGUAGUUUGAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ063130.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   ||||||||||||||||*||||||| targets:25   CUGUUUGUAGAGUGUACUUUGAAU   48 Target Full Sequence	1.5	TSA: Zea mays contig64252, mRNA sequence	NA	coding protein	psRNATarget
EZ109070.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   |||||||||*||||*||||||||| targets:401   CUGUUUGUAAAGUGAAGUUUGAAU   424 Target Full Sequence	2.5	TSA: Zea mays contig44729, mRNA sequence	NA	coding protein	psRNATarget
XM_008663511.2	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   ||*||||*|||||||||||||||| targets:399   CUAUUUGCAGAGUGUAGUUUGAAU   422 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100276607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657435.2	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   |||||||*||||||*||||||||| targets:597   CUGUUUGCAGAGUGGAGUUUGAAU   620 Target Full Sequence	2.5	PREDICTED: Zea mays DCD (Development and Cell Death) domain protein (LOC100192776), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657434.2	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   |||||||*||||||*||||||||| targets:1017   CUGUUUGCAGAGUGGAGUUUGAAU   1040 Target Full Sequence	2.5	PREDICTED: Zea mays DCD (Development and Cell Death) domain protein (LOC100192776), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551416.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   =||||||*||||||*||||||||| targets:1003   UUGUUUGCAGAGUGAAGUUUGAAU   1026 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275912 (LOC100275912), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU973003.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   =|*|||||||||||||||||*||| targets:1204   UUAUUUGUAGAGUGUAGUUUAAAU   1227 Target Full Sequence	1.5	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   =|*|||||||||||||||||*||| targets:1204   UUAUUUGUAGAGUGUAGUUUAAAU   1227 Target Full Sequence	1.5	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   ||*||||*|||||||||||||||* targets:1193   CUAUUUGCAGAGUGUAGUUUGAAA   1216 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   ||*||||*|||||||||||||||* targets:1193   CUAUUUGCAGAGUGUAGUUUGAAA   1216 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU968589.1	ncRNA:24   GAC---AAACAUCUCACAUCAAACUUA   1   |||---||||*||||||*||||||||| targets:590   CUGCMCUUUGCAGAGUGGAGUUUGAAU   616 Target Full Sequence	2.5	Zea mays clone 322573 glycine-rich RNA-binding protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542577.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   |*||||**|||||||||||||||| targets:89   CGGUUUAAAGAGUGUAGUUUGAAU   112 Target Full Sequence	2.0	PREDICTED: Zea mays ERBB-3 BINDING PROTEIN 1-like (LOC103635752), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085770.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   |*|||||||*||||*||||||||| targets:2757   CCGUUUGUAAAGUGAAGUUUGAAU   2780 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061A12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052544.1	ncRNA:24   GACAAACAUCUCACAUCAAACUUA   1   =|*||||||*||||||*||||||| targets:80   UUAUUUGUACAGUGUAAUUUGAAU   103 Target Full Sequence	2.5	TSA: Zea mays contig53665, mRNA sequence	NA	coding protein	psRNATarget