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BaseInfo

ncRNA ID novel_zma_miR9420
Species Zea mays
Class miRNA
Genome position Chr4:140077548-140077609 [+]
Reference genome RefGen_v4
Source SRR4237223
Length 22
Mature sequence(if miRNA) 41 - UUUAAUCCCCUUCAAUCCCCCU - 62
Stem-loop(if miRNA) --                    --   -    
  GGGGAUUGAAGGGGAUUAAA  CCC CCUAG
  ||||||||||||||||||||  ||| ||||A
  CCCCUAACUUCCCCUAAUUU  GGG GGAUA
UC                    AC   A    
Stem-loop sequence GGGGAUUGAAGGGGAUUAAACCCCCUAGAAUAGGAGGGCAUUUAAUCCCCUUCAAUCCCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ059519.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  ||||||||||||||||||||||
targets:437   AGGGGGAUUGAAGGGGAUUAAA   458

0.0 TSA: Zea mays contig60641, mRNA sequence NA coding protein psRNATarget
XM_020552749.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  ||||||||||=|||||||||||
targets:3214   AGGGGGAUUGGAGGGGAUUAAA   3235

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
EZ093244.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |||*||||||=|||||||||||
targets:18   AGGAGGAUUGGAGGGGAUUAAA   39

2.5 TSA: Zea mays contig28894, mRNA sequence NA coding protein psRNATarget
BT054737.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |||*||||||=|||||||||||
targets:132   AGGAGGAUUGGAGGGGAUUAAA   153

2.5 Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |*||||||||=|||||||||||
targets:1282   AAGGGGAUUGGAGGGGAUUAAA   1303

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
HI403018.1
ncRNA:22   UCCC-CCUAACUUCCCCUAAUUU   1
  *|||-|||||||||||||||||=
targets:14   CGGGAGGAUUGAAGGGGAUUAAG   36

3.0 Sequence 1143 from Patent EP2074227 NA coding protein psRNATarget
JB163479.1
ncRNA:22   UCCC-CCUAACUUCCCCUAAUUU   1
  *|||-|||||||||||||||||=
targets:14   CGGGAGGAUUGAAGGGGAUUAAG   36

3.0 Sequence 1143 from Patent EP2559767 NA coding protein psRNATarget
LQ235148.1
ncRNA:22   UCCC-CCUAACUUCCCCUAAUUU   1
  *|||-|||||||||||||||||=
targets:14   CGGGAGGAUUGAAGGGGAUUAAG   36

3.0 Sequence 1143 from Patent EP2985353 NA coding protein psRNATarget
EU942844.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  ***|||||||||||||||||=|
targets:156   UUUGGGAUUGAAGGGGAUUAGA   177

1.5 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
BT041883.1
ncRNA:22   UC--CCCCUAACUUCCCCUAAUUU   1
  ||--|*||||||=|||||||||||
targets:809   AGAAGCGGAUUGGAGGGGAUUAAA   832

2.5 Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds NA coding protein psRNATarget
XM_008675221.2
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  *|*||||||||||||||||=|=
targets:122   CGAGGGAUUGAAGGGGAUUGAG   143

2.5 PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA NA coding protein psRNATarget
BT062257.1
ncRNA:22   UC--CCCCUAACUUCCCCUAAUUU   1
  ||--|*||||||=|||||||||||
targets:1108   AGAAGCGGAUUGGAGGGGAUUAAA   1131

2.5 Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds NA coding protein psRNATarget
EU975659.1
ncRNA:22   UC--CCCCUAACUUCCCCUAAUUU   1
  ||--|*||||||=|||||||||||
targets:2137   AGAAGCGGAUUGGAGGGGAUUAAA   2160

2.5 Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds NA coding protein psRNATarget
NM_001158998.2
ncRNA:22   UC--CCCCUAACUUCCCCUAAUUU   1
  ||--|*||||||=|||||||||||
targets:2138   AGAAGCGGAUUGGAGGGGAUUAAA   2161

2.5 Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA NA coding protein psRNATarget
LQ235121.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |*||*|||||=|||||||||||
targets:24   AAGGAGAUUGGAGGGGAUUAAA   45

2.5 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
JB163452.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |*||*|||||=|||||||||||
targets:24   AAGGAGAUUGGAGGGGAUUAAA   45

2.5 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
HI402991.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |*||*|||||=|||||||||||
targets:24   AAGGAGAUUGGAGGGGAUUAAA   45

2.5 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
BT068750.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |*|*|||||||=||||||||||
targets:76   AAGUGGAUUGAGGGGGAUUAAA   97

2.5 Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds NA coding protein psRNATarget
EU947467.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |***|||||||=||||||||||
targets:1232   AUAUGGAUUGAGGGGGAUUAAA   1253

2.5 Zea mays clone 343885 mRNA sequence NA coding protein psRNATarget
NM_001323405.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  |***|||||||=||||||||||
targets:1935   AUAUGGAUUGAGGGGGAUUAAA   1956

2.5 Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA NA coding protein psRNATarget
EU943240.1
ncRNA:22   UCCCCCUAACUUCCCCUAAUUU   1
  =**||||||||||*||||||||
targets:494   GAAGGGAUUGAAGUGGAUUAAA   515

1.5 Zea mays clone 1589496 mRNA sequence NA coding protein psRNATarget
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