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BaseInfo

ncRNA ID	osa-miRf10539-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGACCUCUUCCUAGGCCUU - NA
Stem-loop(if miRNA)	U             UC    -    ---A    AAGUCU     G -    -UUA    -   G       UGGG    U CCGAGC GAGGUUUAGGAGG  GUCU UGGU    GAGC      CACUU U GGUG    UCUU GGU UUCAAGU    GAUC U |||||| |||||||||||||  |||| ||||    ||||      ||||| | ||||    |||| ||| |||||||    |||| A GGUUCG UUCCGGAUCCUUC  CAGA ACCA    CUCG      GUGGG A CCAU    AGAA CCA AAGUUCA    CUGG G       U             UC    G    GAAG    ---GUU     G U    GAAG    A   -       ----    U
Stem-loop sequence	CCGAGCUGAGGUUUAGGAGGUCGUCUUGGUAGAGCAAGUCUCACUUGUGGUGUUAUCUUGGUGUUCAAGUUGGGGAUCUUAGUGGUCACUUGAAACCAAAGAGAAGUACCUAGGGGUGUUGGCUCGAAGACCAGAGACCUCUUCCUAGGCCUUUGCUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792722.1	ncRNA:20   UUCCGGAUCCUUCUCCAGAG   1   =||||||*|||||||||||| targets:444   GAGGCCUUGGAAGAGGUCUC   463 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group fe-S cluster assembly factor HCF101, chloroplastic (LOC4324700), transcript variant X2, mRNA	fe-S cluster assembly factor HCF101, chloroplastic(LOC4324700)	coding protein	psRNATarget
XM_015792714.1	ncRNA:20   UUCCGGAUCCUUCUCCAGAG   1   =||||||*|||||||||||| targets:447   GAGGCCUUGGAAGAGGUCUC   466 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group fe-S cluster assembly factor HCF101, chloroplastic (LOC4324700), transcript variant X1, mRNA	fe-S cluster assembly factor HCF101, chloroplastic(LOC4324700)	coding protein	psRNATarget
XM_015779127.1	ncRNA:20   UUCCGGAUCCUUCUCCAGAG   1   =|||||*|*||||||||||| targets:583   GAGGCCGAAGAAGAGGUCUC   602 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 (LOC4335086), mRNA	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3(LOC4335086)	coding protein	psRNATarget
AK102094.1	ncRNA:20   UUCCGGAUCCUUCUCCAGAG   1   =|||||*|*||||||||||| targets:592   GAGGCCGAAGAAGAGGUCUC   611 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033083D05, full insert sequence	NA	coding protein	psRNATarget