Search result

BaseInfo

ncRNA ID	novel_zma_miR9419
Species	Zea mays
Class	miRNA
Genome position	Chr4:103371389-103371494 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	83 - AGCCGUCGGAGAUAACCUUAUGUC - 106
Stem-loop(if miRNA)	--      A               --  CC              C   -C       CGUAAG UUAUCUUUGACGGCU  UC  ACAGCCGUCGGACA AAG  UGUCG   |||||| |||||||||||||||  ||  |||||||||||||| |||  ||||G   GUAUUC AAUAGAGGCUGCCGA  AG  UGUCGGCGGCCUGU UUC  AUAGC CU      C               AC  AC              A   CC
Stem-loop sequence	CGUAAGAUUAUCUUUGACGGCUUCCCACAGCCGUCGGACACAAGCUGUCGGCGAUACCCUUAUGUCCGGCGGCUGUCAGACAAGCCGUCGGAGAUAACCUUAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405856.1	ncRNA:24   CUGUAUUCCAAUAGAGGCUGCCGA   1   ||*||||||||||*|||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	2.5	Sequence 3981 from Patent EP2074227	NA	coding protein	psRNATarget
JB166317.1	ncRNA:24   CUGUAUUCCAAUAGAGGCUGCCGA   1   ||*||||||||||*|||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	2.5	Sequence 3981 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237986.1	ncRNA:24   CUGUAUUCCAAUAGAGGCUGCCGA   1   ||*||||||||||*|||||||||* targets:10   GAGAUAAGGUUAUGUCCGACGGCC   33 Target Full Sequence	2.5	Sequence 3981 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008671903.2	ncRNA:24   CUGUAUUCC-AAUAGAGGCUGCCGA   1   |=||-|||*-||||||||||||||| targets:1435   GGCA-AAGACUUAUCUCCGACGGCU   1458 Target Full Sequence	3.0	PREDICTED: Zea mays flavonoid 3'-monooxygenase (LOC103647360), mRNA	NA	coding protein	psRNATarget