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BaseInfo

ncRNA ID	novel_zma_miR9415
Species	Zea mays
Class	miRNA
Genome position	Chr4:137395094-137395191 [-]
Reference genome	RefGen_v4
Source	SRR4237223
Length	22
Mature sequence(if miRNA)	1 - UGACACUCGGCAAAGAACUCUU - 22
Stem-loop(if miRNA)	--GGCG                UCC   A              AU  UG       UCUUUGCCGAGUGUCA   GGG GACACUCGGCAAAG  UA  C       ||||||||||||||||   ||| ||||||||||||||  ||       AGAAACGGCUCACAGU   CCC CUGUGAGCCGUUUC  AU  C UUCUCA                UUA   A              AC  UA
Stem-loop sequence	GGCGUCUUUGCCGAGUGUCAUCCGGGAGACACUCGGCAAAGAUUAUGCCAUUACACUUUGCCGAGUGUCACCCAUUUGACACUCGGCAAAGAACUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238823.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||||*|||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||||*|||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||||*|||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
EU949560.1	ncRNA:22   UU--CUCAAGAAACGGCUCACAGU   1   ||--|*|||||||||||||||||* targets:501   AAUCGCGUUCUUUGCCGAGUGUCU   524 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:22   UU--CUCAAGAAACGGCUCACAGU   1   ||--|*|||||||||||||||||* targets:801   AAUCGUGUUCUUUGCCGAGUGUCU   824 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:22   UU--CUCAAGAAACGGCUCACAGU   1   ||--|*|||||||||||||||||* targets:801   AAUCGUGUUCUUUGCCGAGUGUCU   824 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
EU962802.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ||||**|*|||||||||||||| targets:980   AAGACAUGUUUGCCGAGUGUCA   1001 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ050721.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   =|||**|=|||||||||||||| targets:46   GAGAUCUUUUUGCCGAGUGUCA   67 Target Full Sequence	3.0	TSA: Zea mays contig51841, mRNA sequence	NA	coding protein	psRNATarget
BT042352.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***||*|||||||||||||||| targets:1200   UUUAGCUCUUUGCCGAGUGUCA   1221 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***||*|||||||||||||||| targets:1250   UUUAGCUCUUUGCCGAGUGUCA   1271 Target Full Sequence	1.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
BT035133.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***=|*|||||||||||||||| targets:1294   UUCGGCUCUUUGCCGAGUGUCA   1315 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138164.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***=|*|||||||||||||||| targets:1294   UUCGGCUCUUUGCCGAGUGUCA   1315 Target Full Sequence	2.0	Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA	NA	coding protein	psRNATarget
XM_008668897.2	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***=|*|||||||||||||||| targets:1242   UUCGGCUCUUUGCCGAGUGUCA   1263 Target Full Sequence	2.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547384.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   ***=|*|||||||||||||||| targets:1255   UUCGGCUCUUUGCCGAGUGUCA   1276 Target Full Sequence	2.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067215.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||**|*||||||||||||||| targets:1439   AAGCAUACUUUGCCGAGUGUCA   1460 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||**|*||||||||||||||| targets:1576   AAGCAUACUUUGCCGAGUGUCA   1597 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:22   UUCUCAAGAAACGGCUCACAGU   1   |||**|*||||||||||||||| targets:1576   AAGCAUACUUUGCCGAGUGUCA   1597 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget