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BaseInfo

ncRNA ID	novel_zma_miR9408
Species	Zea mays
Class	miRNA
Genome position	Chr4:225177653-225177740 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	23
Mature sequence(if miRNA)	66 - AAGAGAAGCGCACAGAUGAAGUU - 88
Stem-loop(if miRNA)	--      G                    G  G  G       U   CUUCAU UGUGCGCUUCUCUUCUCUUA GU GG UGCUAAG G   |||||| |||||||||||||||||||| || || |||||||   GAAGUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A UU      G                    A  G  G       U
Stem-loop sequence	CUUCAUGUGUGCGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:23   UUGAAGUAGACACGCGAAGAGAA   1   ==|||=||||||||||||||||| targets:3269   GGCUUUAUCUGUGCGCUUCUCUU   3291 Target Full Sequence	1.0	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:23   UUGAAGUAGACACGCGAAGAGAA   1   ==|||=||||||||||||||||| targets:3407   GGCUUUAUCUGUGCGCUUCUCUU   3429 Target Full Sequence	1.0	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551829.1	ncRNA:23   UUGAAGUAGACACGCGAAGAGAA   1   |=|||||*|||*||||||||||| targets:133   AGCUUCAGCUGCGCGCUUCUCUU   155 Target Full Sequence	2.5	PREDICTED: Zea mays protein PROTON GRADIENT REGULATION 5, chloroplastic-like (LOC103653244), mRNA	NA	coding protein	psRNATarget
XM_020539254.1	ncRNA:23   UUGAAGUAGACACGCGAAGAGAA   1   =*||||*|||||||*|||||||| targets:2394   GUCUUCUUCUGUGCACUUCUCUU   2416 Target Full Sequence	2.5	PREDICTED: Zea mays protein ALP1-like (LOC109940154), mRNA	NA	coding protein	psRNATarget