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BaseInfo

ncRNA ID novel_zma_miR9403
Species Zea mays
Class miRNA
Genome position Chr3:158685727-158685788 [+]
Reference genome RefGen_v4
Source SRR4237223;SRR4237225;SRR4237226
Length 24
Mature sequence(if miRNA) 1 - AUAAUCUGAACCCAUAAUCUAGAU - 24
Stem-loop(if miRNA) --        -A  CC         -AU  UU
  AUAAUCUG  AC  AUAAUCUAG   GU  A
  ||||||||  ||  |||||||||   ||
  UAUUAGAU  UG  UAUUAGAUC   CA  U
UA        CG  UU         AUC  UU
Stem-loop sequence AUAAUCUGAACCCAUAAUCUAGAUGUUUAUUUACCUACUAGAUUAUUUGUGCUAGAUUAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008683420.2
ncRNA:24   UAGAUCUAAUACCCAAGUCUAAUA   1
  ||*|||||||||||||||||||||
targets:104   AUAUAGAUUAUGGGUUCAGAUUAU   127

0.0 PREDICTED: Zea mays DnaJ/Hsp40 cysteine-rich domain superfamily protein (LOC100276646), transcript variant X1, mRNA NA coding protein psRNATarget
EU976590.1
ncRNA:24   UAGAUCUAAUACCCAAGUCUAAUA   1
  |*||||||||||*|||||||||||
targets:1688   AACUAGAUUAUGUGUUCAGAUUAU   1711

1.5 Zea mays clone 984325 mRNA sequence NA coding protein psRNATarget