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BaseInfo

ncRNA ID	novel_zma_miR9397
Species	Zea mays
Class	miRNA
Genome position	Chr3:56887010-56887198 [+]
Reference genome	RefGen_v4
Source	SRR4237223;SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UGAGGAAUGGACUCAUGAUGCACC - 24
Stem-loop(if miRNA)	--         G     U      C  C  A  G               AC              U    UAUA     AAAA        AG  CU   UGAGGAAUG ACUCA GAUGCA CA CU AU UUAGAUGGAGUGAUU  UUAAACCAAACACC CCUG    UGUCU    AGUUUUAU  AG  U   ||||||||| ||||| |||||| || || || |||||||||||||||  |||||||||||||| ||||    |||||    ||||||||  ||   ACUCUUUAC UGAGU CUACGU GU GA UA AAUCUACUUCACUAA  AGUUUGGUUUGUGG GGAU    AUAGA    UCAAAAUA  UC  A AA         A     C      A  A  G  G               GU              -    -UCA     ---A        AG  AA
Stem-loop sequence	UGAGGAAUGGACUCAUGAUGCACCACCUAAUGUUAGAUGGAGUGAUUACUUAAACCAAACACCUCCUGUAUAUGUCUAAAAAGUUUUAUAGAGCUUAAACUGAAUAAAACUAAGAUAACUUAGGGGUGUUUGGUUUGAUGAAUCACUUCAUCUAAGAUGAGAUGAUGCAUCCUGAGUACAUUUCUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ075113.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   |||||||||||=|||||||||||| targets:64   GGUGCAUCAUGGGUCCAUUCCUCA   87 Target Full Sequence	1.5	TSA: Zea mays contig10750, mRNA sequence	NA	coding protein	psRNATarget
EZ095024.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   |||||||||||||||||||*|||| targets:75   GGUGCAUCAUGAGUCCAUUACUCA   98 Target Full Sequence	1.5	TSA: Zea mays contig30676, mRNA sequence	NA	coding protein	psRNATarget
EU946477.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   ||||||||||||||*||||||||| targets:259   GGUGCAUCAUGAGUACAUUCCUCA   282 Target Full Sequence	1.5	Zea mays clone 313395 mRNA sequence	NA	coding protein	psRNATarget
BT040813.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   |||||||||||||||||||*|||| targets:1228   GGUGCAUCAUGAGUCCAUUACUCA   1251 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0132I23 mRNA, complete cds	NA	coding protein	psRNATarget
EU971066.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   |||*|||||||||||||||=|||| targets:1511   GGUACAUCAUGAGUCCAUUUCUCA   1534 Target Full Sequence	1.5	Zea mays clone 356857 glucan endo-1,3-beta-glucosidase precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158057.1	ncRNA:24   CCACGUAGUACUCAGGUAAGGAGU   1   |||*|||||||||||||||=|||| targets:1511   GGUACAUCAUGAGUCCAUUUCUCA   1534 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285163 (umc1419), mRNA	NA	coding protein	psRNATarget