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BaseInfo

ncRNA ID	novel_zma_miR9392
Species	Zea mays
Class	miRNA
Genome position	Chr10:79171034-79171144 [+]
Reference genome	RefGen_v4
Source	SRR4237223;SRR4237227
Length	21
Mature sequence(if miRNA)	1 - UGUUUGGAAUUAUAAUCUGCC - 21
Stem-loop(if miRNA)	--U     GA           -   A                 AC       C  A    GUUUG  AUUAUAAUCUG CCA GAUUAUAUAAUCCAACA  UUUUGAA UA C    |||||  ||||||||||| ||| |||||||||||||||||  ||||||| || A    UAAAC  UAAUAUUAGAC GGU CUAAUAUAUUAGGUUGU  AAAACUU AU C UGU     AC           U   -                 GA       A  U
Stem-loop sequence	UGUUUGGAAUUAUAAUCUGCCAAGAUUAUAUAAUCCAACAACUUUUGAACUAACACUUAAUUCAAAAAGUGUUGGAUUAUAUAAUCUGGUCAGAUUAUAAUCACAAAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107155.1	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ||||||||||||||||||||| targets:622   GGCAGAUUAUAAUUCCAAACA   642 Target Full Sequence	0.0	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
XM_008680041.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ||=|||||||||||=|||||| targets:30   GGUAGAUUAUAAUUUCAAACA   50 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 CYP71D312 (LOC103653077), mRNA	NA	coding protein	psRNATarget
XM_008648079.2	ncRNA:21   CCG-UCUAAUAUUAAGGUUUGU   1   |||-|||||||||||||||||| targets:2009   GGCUAGAUUAUAAUUCCAAACA   2030 Target Full Sequence	2.0	PREDICTED: Zea mays galactoside 2-alpha-L-fucosyltransferase (LOC103627780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665368.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ||||||||||||||=|||||* targets:1573   GGCAGAUUAUAAUUUCAAACU   1593 Target Full Sequence	2.5	PREDICTED: Zea mays Putative heavy metal transport/detoxification superfamily protein (LOC103642052), mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   |*||||||||||||||||||| targets:2123   GACAGAUUAUAAUUCCAAACA   2143 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   |*|||||||||||*||||||| targets:2180   GACAGAUUAUAAUCCCAAACA   2200 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ089583.1	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   |||||||||||||*||||||| targets:19   GGCAGAUUAUAAUCCCAAACA   39 Target Full Sequence	1.5	TSA: Zea mays contig25229, mRNA sequence	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   **=|||||||||||=|||||| targets:2357   AAUAGAUUAUAAUUUCAAACA   2377 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
XM_020546835.1	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   |*|||||||||||*||||||| targets:981   GCCAGAUUAUAAUCCCAAACA   1001 Target Full Sequence	1.5	PREDICTED: Zea mays WAT1-related protein At5g64700-like (LOC109943524), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ064625.1	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   **=||||||||||*||||||| targets:20   AAUAGAUUAUAAUCCCAAACA   40 Target Full Sequence	2.5	TSA: Zea mays contig00257, mRNA sequence	NA	coding protein	psRNATarget
EZ078154.1	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   **=||||||||||*||||||| targets:59   UAUAGAUUAUAAUCCCAAACA   79 Target Full Sequence	2.5	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
XM_008660979.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ***||||||||||*||||||| targets:1836   UAAAGAUUAUAAUACCAAACA   1856 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660980.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ***||||||||||*||||||| targets:1712   UAAAGAUUAUAAUACCAAACA   1732 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660981.2	ncRNA:21   CCGUCUAAUAUUAAGGUUUGU   1   ***||||||||||*||||||| targets:1703   UAAAGAUUAUAAUACCAAACA   1723 Target Full Sequence	2.5	PREDICTED: Zea mays CHD3-type chromatin-remodeling factor PICKLE (LOC103637982), transcript variant X3, mRNA	NA	coding protein	psRNATarget