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BaseInfo

ncRNA ID novel_zma_miR9389
Species Zea mays
Class miRNA
Genome position Chr3:48430813-48430860 [-]
Reference genome RefGen_v4
Source SRR4237223;SRR4237227
Length 23
Mature sequence(if miRNA) 1 - AAUAGAGAGGGAGGGCAGAGUCC - 23
Stem-loop(if miRNA) --             A      GG
  GCUCUGCCCUUCC UCUCUA  A
  ||||||||||||| ||||||  U
  UGAGACGGGAGGG AGAGAU  A
CC             -      AA
Stem-loop sequence GCUCUGCCCUUCCAUCUCUAGGAUAAAUAGAGAGGGAGGGCAGAGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001143238.1
ncRNA:23   CCUGAGACGGGAGGGAGAGAUAA   1
  ***||||||=|||=|||||||||
targets:211   CUUCUCUGCUCUCUCUCUCUAUU   233

2.5 Zea mays uncharacterized LOC100216846 (LOC100216846), mRNA NA coding protein psRNATarget
BT037442.1
ncRNA:23   CCUGAGACGGGAGGGAGAGAUAA   1
  ***||||||=|||=|||||||||
targets:211   CUUCUCUGCUCUCUCUCUCUAUU   233

2.5 Zea mays full-length cDNA clone ZM_BFb0169H15 mRNA, complete cds NA coding protein psRNATarget