Search result

BaseInfo

ncRNA ID	novel_zma_miR9380
Species	Zea mays
Class	miRNA
Genome position	Chr3:161966861-161966979 [-]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	96 - GGUUGAUUUGGUGACAAAGGGAUC - 119
Stem-loop(if miRNA)	--               AA       C    A      A         U A       GA   GGUUGAUUUGGUGAC  AGGGAUC UGGA GGAUUG AGAGGAUUG G GGGAAAU  A   |||||||||||||||  ||||||| |||| |||||| ||||||||| | |||||||   CCGAUUAAACCACUG  UCUCUAG GCCU CCUAAC UCUCCUAAC C CCCUUUA  C UC               -G       A    C      C         U C       AU
Stem-loop sequence	GGUUGAUUUGGUGACAAAGGGAUCCUGGAAGGAUUGAAGAGGAUUGUGAGGGAAAUGAACUAAUUUCCCCCUCAAUCCUCUCCAAUCCCUCCGAGAUCUCUGGUCACCAAAUUAGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||||| targets:106   GAUCCCCUUGUCACCAAAUCAACC   129 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||||| targets:300   GAUCCCCUUGUCACCAAAUCAACC   323 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||||| targets:114   GAUCCCCUUGUCACCAAAUCAACC   137 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||||| targets:1499   GAUCCCCUUGUCACCAAAUCAACC   1522 Target Full Sequence	1.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:96   GAUCCCCUUGUCACCAAAUCAGCC   119 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:96   GAUCCCCUUGUCACCAAAUCAGCC   119 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:96   GAUCCCCUUGUCACCAAAUCAGCC   119 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:850   GAUCCCCUUGUCACCAAAUCAGCC   873 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:889   GAUCCCCUUGUCACCAAAUCAGCC   912 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:894   GAUCCCCUUGUCACCAAAUCAGCC   917 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||||=|| targets:894   GAUCCCCUUGUCACCAAAUCAGCC   917 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||||||*||||||||||||*|||| targets:403   GAUCCCCUUGUCACCAAAUGAACC   426 Target Full Sequence	2.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
LQ235430.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   ||*|=|*||||||||||||=|||| targets:60   GACCUCCUUGUCACCAAAUUAACC   83 Target Full Sequence	2.5	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   |||||**||*|||||||||||||| targets:1652   GAUCCACUUAUCACCAAAUCAACC   1675 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   |||||**||*|||||||||||||| targets:1652   GAUCCACUUAUCACCAAAUCAACC   1675 Target Full Sequence	3.0	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   CUAGGGAAACAGUGGUUUAGUUGG   1   |||||**||*|||||||||||||| targets:1760   GAUCCACUUAUCACCAAAUCAACC   1783 Target Full Sequence	3.0	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget