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BaseInfo

ncRNA ID	novel_zma_miR9373
Species	Zea mays
Class	miRNA
Genome position	Chr3:229716330-229716519 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	21
Mature sequence(if miRNA)	170 - UGUUUGACUUAGGACAAAGCU - 190
Stem-loop(if miRNA)	--   C   A             AC  A     AC    U    C        --CUUC  G        A UACAAAUUAUAUAUUAUGGAAGUAUU   CUU GUC UAAGUCAAACAUU  UA CUUUG  CAUC AUUU AAAAAAAU      UA UUUCAUAA A                          U   ||| ||| |||||||||||||  || |||||  |||| |||| ||||||||      || |||||||| |   GAA CAG AUUCAGUUUGUAA  AU GAAAC  GUAG UAAA UUUUUUUA      AA GUACCUUA U                          U UC   A   G             AC  A     -C    C    -        AUAUCC  -        - UCAAAAUACAAAAACAUAAGUGAUAC
Stem-loop sequence	CUUCGUCAUAAGUCAAACAUUACUAACUUUGACCAUCUAUUUCAAAAAAAUCUUCUAGUUUCAUAAAAUACAAAUUAUAUAUUAUGGAAGUAUUUUCAUAGUGAAUACAAAAACAUAAAACUUAUUCCAUGAACCUAUAAUUUUUUUAAAUCGAUGCCAAAGAUACAAAUGUUUGACUUAGGACAAAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU962073.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||||||||=|||||||||||| targets:210   AGCUUUGUUCUAAGUCAAACA   230 Target Full Sequence	1.5	Zea mays clone 240044 mRNA sequence	NA	coding protein	psRNATarget
XM_020549684.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||||||||||||||||||||* targets:762   AGCUUUGUCCUAAGUCAAACU   782 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280234 (LOC100280234), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055832.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||||||||||||||||||||* targets:767   AGCUUUGUCCUAAGUCAAACU   787 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0224P07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174894.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||*|||||||||||||||||| targets:1980   AGGUUUGUCCUAAGUCAAACA   2000 Target Full Sequence	1.0	Zea mays Nuclear pore complex protein NUP155 (LOC100382133), mRNA	NA	coding protein	psRNATarget
BT063276.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||*|||||||||||||||||| targets:1980   AGGUUUGUCCUAAGUCAAACA   2000 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0046L23 mRNA, complete cds	NA	coding protein	psRNATarget
EU947774.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   ||*|||||||||||||||||| targets:76   AGGUUUGUCCUAAGUCAAACA   96 Target Full Sequence	1.0	Zea mays clone 358327 mRNA sequence	NA	coding protein	psRNATarget
BT041955.2	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |||||||||||||*||||||= targets:480   AGCUUUGUCCUAACUCAAACG   500 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0088P10 mRNA, complete cds	NA	coding protein	psRNATarget
BT033958.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   =**|||||=|||||||||||| targets:131   GUAUUUGUUCUAAGUCAAACA   151 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044C11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656425.2	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1446   AUCUUUGGCCUAAUUCAAACA   1466 Target Full Sequence	2.5	PREDICTED: Zea mays Mannose-1-phosphate guanylyltransferase 1 (AY110569), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656423.2	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1443   AUCUUUGGCCUAAUUCAAACA   1463 Target Full Sequence	2.5	PREDICTED: Zea mays Mannose-1-phosphate guanylyltransferase 1 (AY110569), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656424.2	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1423   AUCUUUGGCCUAAUUCAAACA   1443 Target Full Sequence	2.5	PREDICTED: Zea mays Mannose-1-phosphate guanylyltransferase 1 (AY110569), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001148830.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1383   AUCUUUGGCCUAAUUCAAACA   1403 Target Full Sequence	2.5	Zea mays Mannose-1-phosphate guanylyltransferase 1 (AY110569), mRNA	NA	coding protein	psRNATarget
BT043131.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1383   AUCUUUGGCCUAAUUCAAACA   1403 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0104H05 mRNA, complete cds	NA	coding protein	psRNATarget
BT035586.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1414   AUCUUUGGCCUAAUUCAAACA   1434 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070M16 mRNA, complete cds	NA	coding protein	psRNATarget
EU961026.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1330   AUCUUUGGCCUAAUUCAAACA   1350 Target Full Sequence	2.5	Zea mays clone 230537 mRNA sequence	NA	coding protein	psRNATarget
BT024139.1	ncRNA:21   UCGAAACAGGAUUCAGUUUGU   1   |*|||||*|||||*||||||| targets:1114   AUCUUUGGCCUAAUUCAAACA   1134 Target Full Sequence	2.5	Zea mays clone EL01N0444A10 mRNA sequence	NA	coding protein	psRNATarget