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BaseInfo

ncRNA ID novel_zma_miR9369
Species Zea mays
Class miRNA
Genome position Chr2:72287976-72288191 [+]
Reference genome RefGen_v4
Source SRR4237223
Length 21
Mature sequence(if miRNA) 196 - ACCGGCUCACCAUCAUCUGGC - 216
Stem-loop(if miRNA) --CAAACA                  C                                    C A      C                    U  C  CUA     A
        AUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCC G CUUCGU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U
        |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| || ||   |||||
        UACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGG C GAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C
CGGUCUAC                  U                                    A C      C                    C  C  CAC     A
Stem-loop sequence CAAACAAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGACUUCGUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCCAGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCAUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3205   GCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3343   GCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget