ncRNA ID | novel_zma_miR9369 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:72287976-72288191 [+] |
Reference genome | RefGen_v4 |
Source | SRR4237223 |
Length | 21 |
Mature sequence(if miRNA) | 196 - ACCGGCUCACCAUCAUCUGGC - 216 |
Stem-loop(if miRNA) |
--CAAACA                  C                                    C A      C                    U  C  CUA     A         AUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCC G CUUCGU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U         |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| || ||   |||||         UACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGG C GAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C CGGUCUAC                  U                                    A C      C                    C  C  CAC     A |
Stem-loop sequence | CAAACAAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGACUUCGUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCCAGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCAUCUGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020538582.1 |
|
1.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020538581.1 |
|
1.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA | NA | coding protein | psRNATarget |