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BaseInfo

ncRNA ID novel_zma_miR9362
Species Zea mays
Class miRNA
Genome position Chr10:14964142-14964357 [-]
Reference genome RefGen_v4
Source SRR4237223
Length 21
Mature sequence(if miRNA) 1 - ACCGGCUCACCAUCAUCUGGC - 21
Stem-loop(if miRNA) --    C                   C                               C         U   C    C               U  C  CUA     A
  CAGA GAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U
  |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||
  GUCU CUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C
CG    A                   U                               A         C   C    A               C  C  CAC     A
Stem-loop sequence CAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCAUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3205   GCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3343   GCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget