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BaseInfo

ncRNA ID novel_zma_miR9358
Species Zea mays
Class miRNA
Genome position Chr2:225591338-225591553 [+]
Reference genome RefGen_v4
Source SRR4237223
Length 21
Mature sequence(if miRNA) 196 - ACCGGCUCACCAUCAUCUGGC - 216
Stem-loop(if miRNA) --    C                   C                         U     C         U   C    C               U  C  CUA     A
  CAGA GAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUU AAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U
  |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||
  GUCU CUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAA UUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C
CG    A                   U                         U     A         C   C    A               C  C  AGC     A
Stem-loop sequence CAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCGACCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUUAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCAUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3205   GCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3343   GCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget