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BaseInfo

ncRNA ID	novel_zma_miR9352
Species	Zea mays
Class	miRNA
Genome position	Chr1:103750023-103750244 [+]
Reference genome	RefGen_v4
Source	SRR4237223;SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GUUGAACUUUAUGCACCUGAGAGA - 24
Stem-loop(if miRNA)	GUUG     U      --    G     UAGCAACUAG            --GUCA  A GGUUUGUGAUGGACGUCAAACACCAAAAUCUAUUAUAGGAAAUGAUGAAGCCCAUUUC     AACUU AUGCAC  CUGA AGAAU          GCAAACUAGUUA      CU U                                                          C     ||||| ||||||  |||| |||||          ||||||||||||      || |     UUGAA UACGUG  GACU UUUUA          CGUUUGAUCAAU      AU G                                                          C UUCA     -      UA    G     ----------            GUAAAC  - UGAAACAUAAACGAAACCAAAUACAACCGUAGUUAGUGGUUUUCCCCCCUCUAACUUU
Stem-loop sequence	GUUGAACUUUAUGCACCUGAGAGAAUUAGCAACUAGGCAAACUAGUUAGUCACUAUGGUUUGUGAUGGACGUCAAACACCAAAAUCUAUUAUAGGAAAUGAUGAAGCCCAUUUCCCUUUCAAUCUCCCCCCUUUUGGUGAUUGAUGCCAACAUAAACCAAAGCAAAUACAAAGUGUACAAAUGUAACUAGUUUGCAUUUUGUCAGAUGUGCAUAAGUUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088050.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |*||||||||||||||=||||||| targets:950   UAUCUCAGGUGCAUAAGGUUCAAC   973 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0379I10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196891.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |*||||||||||||||=||||||| targets:950   UAUCUCAGGUGCAUAAGGUUCAAC   973 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502413 (LOC100502413), mRNA	NA	coding protein	psRNATarget
BT063396.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |=||||||||||||||||||||** targets:2402   UUUCUCAGGUGCAUAAAGUUCACA   2425 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU947420.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |*|||=|||||||*|||||||||| targets:145   UAUCUUAGGUGCACAAAGUUCAAC   168 Target Full Sequence	2.5	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
EZ102376.1	ncRNA:24   AGAG-AGUCCACGUAUUUC-AAGUUG   1   ||*|-||||||||||||||-|||||| targets:32   UCACGUCAGGUGCAUAAAGGUUCAAC   57 Target Full Sequence	3.0	TSA: Zea mays contig38032, mRNA sequence	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |*|=*|||||||||||=||||||| targets:669   UAUUACAGGUGCAUAAGGUUCAAC   692 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   |*|=*|||||||||||=||||||| targets:677   UAUUACAGGUGCAUAAGGUUCAAC   700 Target Full Sequence	1.5	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541939.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   ******||||||||||=||||||| targets:858   GAGACAAGGUGCAUAAGGUUCAAC   881 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541938.1	ncRNA:24   AGAGAGUCCACGUAUUUCAAGUUG   1   ******||||||||||=||||||| targets:871   GAGACAAGGUGCAUAAGGUUCAAC   894 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA	NA	coding protein	psRNATarget