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BaseInfo

ncRNA ID	novel_zma_miR9347
Species	Zea mays
Class	miRNA
Genome position	Chr1:13201392-13201548 [-]
Reference genome	RefGen_v4
Source	SRR4237223
Length	21
Mature sequence(if miRNA)	1 - AAAUAUUAGUCUCUAGAAACC - 21
Stem-loop(if miRNA)	--                          UC          U       GUAU                             UUUCUAGGGACUAAUGUUUAGUCCCU  AUUUUAUUCC UUUUAGU    AAAUUGCUAAAUAUAGAAACUAAAAUA   ||||||||||||||||||||||||||  |||||||||| |||||||    ||||||||||||||||||||||||||A   AAAGAUCUCUGAUUAUAAAUCAGGGA  UAAAAUAAGG AAAAUCA    UUUAACGGUUUAUAUCUUUGAUUUUGA CC                          UC          U       AGAU
Stem-loop sequence	UUUCUAGGGACUAAUGUUUAGUCCCUUCAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGGCAAUUUUAGAACUAAAAUGGAAUAAAAUCUAGGGACUAAAUAUUAGUCUCUAGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152323.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||=||||||||||| targets:1940   GGUUUCUAGGGACUAAUAUUU   1960 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||=||||||||||| targets:1940   GGUUUCUAGGGACUAAUAUUU   1960 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||=||||||||||| targets:793   GGUUUCUAGGGACUAAUAUUU   813 Target Full Sequence	1.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||=||||||||||| targets:793   GGUUUCUAGGGACUAAUAUUU   813 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065747.2	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||=||||||||||| targets:770   GGUUUCUAGGGACUAAUAUUU   790 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163418.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1082 from Patent EP2559767	NA	coding protein	psRNATarget
JB163456.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
HI402957.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1082 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235087.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1082 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
JB163556.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||||||*||||||||||| targets:10   GGUUUCUAGUGACUAAUAUUU   30 Target Full Sequence	1.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||*|||=||||||||||| targets:2912   GGUUUGUAGGGACUAAUAUUU   2932 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
NM_001111805.2	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   *||||||||||||||||*||| targets:1486   UGUUUCUAGAGACUAAUUUUU   1506 Target Full Sequence	1.5	Zea mays uncharacterized LOC542191 (TIDP2941), mRNA	NA	coding protein	psRNATarget
AY104678.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   *||||||||||||||||*||| targets:1475   UGUUUCUAGAGACUAAUUUUU   1495 Target Full Sequence	1.5	Zea mays PCO081661 mRNA sequence	NA	coding protein	psRNATarget
AY104317.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   |||||*|||||||||||*||| targets:1602   GGUUUAUAGAGACUAAUUUUU   1622 Target Full Sequence	2.5	Zea mays PCO132144 mRNA sequence	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:21   CCAAAGAUCUCUGAUUAUAAA   1   *||||*|||||||||||*||| targets:2629   AGUUUAUAGAGACUAAUUUUU   2649 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget