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BaseInfo

ncRNA ID	novel_zma_miR9345
Species	Zea mays
Class	miRNA
Genome position	Chr4:159845354-159845580 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	204 - AUGAUAUCAUGACACGUAGACAAG - 227
Stem-loop(if miRNA)	--    C                     AC               U  U     G   G      GU     GA A A       G          AAA     CA      CA   UGUC ACGUGUUAUGAUAUCAUAUGU  AGGCUGUGAUAAAAA UU AGAAU UUU GAGAAA  UGUGA  C C AUGUGUA AAACCUAAGA   CUACA  UGAAAU  U   |||| |||||||||||||||||||||  ||||||||||||||| || ||||| ||| ||||||  |||||  | | ||||||| ||||||||||   |||||  ||||||   ACAG UGCACAGUACUAUAGUAUACA  UCCGACACUAUUUUU AA UUUUA AAA CUCUUU  AUACU  G G UACACAU UUUGGAUUCU   GGUGU  ACUUUG  A GA    A                     AU               U  C     A   G      UG     GC C A       G          CUA     -A      AG
Stem-loop sequence	UGUCCACGUGUUAUGAUAUCAUAUGUACAGGCUGUGAUAAAAAUUUUAGAAUGUUUGGAGAAAGUUGUGAGACACAAUGUGUAGAAACCUAAGAAAACUACACAUGAAAUCAUAGAGUUUCAAUGUGGAUCUCUUAGGUUUGUACACAUAGCGCGUCAUAGUUUUCUCGAAAAAUUUUCAAUUUUUUAUCACAGCCUUAACAUAUGAUAUCAUGACACGUAGACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235350.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget