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BaseInfo

ncRNA ID	novel_zma_miR9336
Species	Zea mays
Class	miRNA
Genome position	Chr4:229014044-229014182 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	21
Mature sequence(if miRNA)	1 - UGUGCACUUGCUGCUGAUUGU - 21
Stem-loop(if miRNA)	--        CU    C      ----    -C   A -      C  GAGUUC   UU -   G   CU    GG   AAUCGGCG  GCGG UGCGCA    CGCC  CCG C CCCUAC GC      CGU  C CGC GCC  GGGG  G   ||||||||  |||| ||||||    ||||  ||| | |||||| ||      |||  | ||| |||  ||||   UUAGUCGU  CGUU ACGUGU    GCGG  GGU G GGGGUG CG      GCG  G GCG CGG  UCUC  A UG        --    C      UGUA    UU   C U      A  ---ACU   GG A   G   -U    AU
Stem-loop sequence	AAUCGGCGCUGCGGCUGCGCACGCCCCCGACCCCUACCGCGAGUUCCGUUUCCGCGGCCCUGGGGGGGAUACUCUUGGCGGCGAGGGGCGUCAGCAGUGGGGUGCUGGUUGGCGAUGUUGUGCACUUGCUGCUGAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU969892.1	ncRNA:21   UGUUAGUCGUCGUUCACGUGU   1   *|||*||||||||||||||*| targets:1437   CCAAGCAGCAGCAAGUGCAAA   1457 Target Full Sequence	2.5	Zea mays clone 336899 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU946890.1	ncRNA:21   UGUUAGUCGUCGUUCACGUGU   1   =*||||||||||||||*|||* targets:184   GAAAUCAGCAGCAAGUCCACC   204 Target Full Sequence	2.5	Zea mays clone 324633 mRNA sequence	NA	coding protein	psRNATarget
EU973552.1	ncRNA:21   UGUUAGUCGUCGUUCACGUGU   1   =*||||||||||||||*|||* targets:482   GAAAUCAGCAGCAAGUCCACC   502 Target Full Sequence	2.5	Zea mays clone 400885 IAA9 - auxin-responsive Aux/IAA family member mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154366.2	ncRNA:21   UGUUAGUCGUCGUUCACGUGU   1   =*||||||||||||||*|||* targets:626   GAAAUCAGCAGCAAGUCCACC   646 Target Full Sequence	2.5	Zea mays IAA9 - auxin-responsive Aux/IAA family member (LOC100281448), mRNA	NA	coding protein	psRNATarget
EU956739.1	ncRNA:21   UGUUAGUCGUCGUUCACGUGU   1   =*||||||||||||||*|||* targets:622   GAAAUCAGCAGCAAGUCCACC   642 Target Full Sequence	2.5	Zea mays clone 1572210 IAA9 - auxin-responsive Aux/IAA family member mRNA, complete cds	NA	coding protein	psRNATarget