ncRNA ID | novel_zma_miR9335 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:234849368-234849490 [-] |
Reference genome | RefGen_v4 |
Source | SRR4237223 |
Length | 24 |
Mature sequence(if miRNA) | 100 - AAGGCUGGUUUGGAAACUCAAAUC - 123 |
Stem-loop(if miRNA) |
--                          --U    AA        --  AUU C      AUU   AAGGCUGGUUUGGAAACUCAAAUCCC   UCCG  AUUGGAGG  GG   G GAGAAA   A   ||||||||||||||||||||||||||   ||||  ||||||||  ||   | ||||||   G   UUCCGAUCAAACCUUUGAGUUUAGGG   AGGC  UAAUCUCC  CC   C CUCUUU   U AC                          CCU    CC        UG  ACU C      AUU |
Stem-loop sequence | AAGGCUGGUUUGGAAACUCAAAUCCCUUCCGAAAUUGGAGGGGAUUGCGAGAAAAUUAGUUUAUUUCUCCCUCACCGUCCUCUAAUCCCGGAUCCGGGAUUUGAGUUUCCAAACUAGCCUUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ071161.1 |
|
2.5 | TSA: Zea mays contig06798, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_020553162.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC100273419 (si946066f08(152)), transcript variant X4, mRNA | NA | coding protein | psRNATarget |