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BaseInfo

ncRNA ID novel_zma_miR9335
Species Zea mays
Class miRNA
Genome position Chr1:234849368-234849490 [-]
Reference genome RefGen_v4
Source SRR4237223
Length 24
Mature sequence(if miRNA) 100 - AAGGCUGGUUUGGAAACUCAAAUC - 123
Stem-loop(if miRNA) --                          --U    AA        --  AUU C      AUU
  AAGGCUGGUUUGGAAACUCAAAUCCC   UCCG  AUUGGAGG  GG   G GAGAAA   A
  ||||||||||||||||||||||||||   ||||  ||||||||  ||   | ||||||   G
  UUCCGAUCAAACCUUUGAGUUUAGGG   AGGC  UAAUCUCC  CC   C CUCUUU   U
AC                          CCU    CC        UG  ACU C      AUU
Stem-loop sequence AAGGCUGGUUUGGAAACUCAAAUCCCUUCCGAAAUUGGAGGGGAUUGCGAGAAAAUUAGUUUAUUUCUCCCUCACCGUCCUCUAAUCCCGGAUCCGGGAUUUGAGUUUCCAAACUAGCCUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ071161.1
ncRNA:24   CUAAACUCAAAGGUUUGGUCGGAA   1
  *||||*|||||||||||=||||||
targets:118   AAUUUAAGUUUCCAAACUAGCCUU   141

2.5 TSA: Zea mays contig06798, mRNA sequence NA coding protein psRNATarget
XM_020553162.1
ncRNA:24   CUAAACUCAAAGGUUUGGUCGGAA   1
  ||||||*||||||||||||||*||
targets:890   GAUUUGUGUUUCCAAACCAGCAUU   913

2.5 PREDICTED: Zea mays uncharacterized LOC100273419 (si946066f08(152)), transcript variant X4, mRNA NA coding protein psRNATarget