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BaseInfo

ncRNA ID novel_zma_miR9332
Species Zea mays
Class miRNA
Genome position Chr10:75511928-75512143 [-]
Reference genome RefGen_v4
Source SRR4237223
Length 21
Mature sequence(if miRNA) 1 - ACCGGCUCACCAUCAUCUGGC - 21
Stem-loop(if miRNA) --    C    U              A                         A               G   G                    G  G  G       U
  CAGA GAUG UGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUU AAAGCUGCCCCGGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G
  |||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| || || |||||||
  GUCU CUAC ACUCGGCCACAUGA ACAGGCCUGCACACCAGUGUUUUAA UUUCGGCGGGGCCGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A
CG    A    C              G                         A               A   G                    A  G  G       U
Stem-loop sequence CAGACGAUGUUGAGCCGGUGUACUAUGUCCGGAUGUGUGGUCACAAAAUUAAAAGCUGCCCCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGCCGGGGCGGCUUUAAAUUUUGUGACCACACGUCCGGACAGAGUACACCGGCUCACCAUCAUCUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3205   GCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   CGGUCUACUACCACUCGGCCA   1
  ||||||*||||||||||||||
targets:3343   GCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget