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BaseInfo

ncRNA ID	novel_zma_miR9330
Species	Zea mays
Class	miRNA
Genome position	Chr4:139140165-139140391 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	204 - AUGAUAUCAUGACACGUAGACAAG - 227
Stem-loop(if miRNA)	--    C  A                       CC                          U    G                       C       U U   CA      CA   UGUC AC UGUUAUGAUAUCAUAUAUAGAGG  GUGAUAAAAAUUUGAGAAAGUUUCGA AAAG UGUGACGCACUAUGUGUAGAAAC UAAGAGA C ACA  UGAAAU  U   |||| || |||||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| | |||  ||||||   ACAG UG ACAGUACUAUAGUAUAUAUCUCC  CACUAUUUUUAAACUCUUUCAAAGCU UUUC ACACUGCGUGAUACACAUCUUUG AUUCUCU G UGU  ACUUUG  A GA    A  C                       AA                          C    A                       U       U C   -A      AG
Stem-loop sequence	UGUCCACAUGUUAUGAUAUCAUAUAUAGAGGCCGUGAUAAAAAUUUGAGAAAGUUUCGAUAAAGGUGUGACGCACUAUGUGUAGAAACCUAAGAGAUCUACACAUGAAAUCAUAGAGUUUCAAUGUCGUUCUCUUAUGUUUCUACACAUAGUGCGUCACAACUUUCUCGAAACUUUCUCAAAUUUUUAUCACAACCUCUAUAUAUGAUAUCAUGACACGUAGACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163681.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   ||||||*||||||||||||||||| targets:7   CUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   =|||||*||||||||||||||||| targets:7   UUUGUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   GAACAGAUGCACAGUACUAUAGUA   1   |||*||*||||||||||||||||| targets:7   CUUCUCCACGUGUCAUGAUAUCAU   30 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget