Search result

BaseInfo

ncRNA ID	novel_zma_miR9329
Species	Zea mays
Class	miRNA
Genome position	Chr1:303656338-303656566 [-]
Reference genome	RefGen_v4
Source	SRR4237223
Length	25
Mature sequence(if miRNA)	205 - ACGUAUCUUGUGAGCAAGGAGCCCU - 229
Stem-loop(if miRNA)	--                    G CC  C                                                                               A AGAG   ACGUAUCUUGUGAGCAAGGA C  UG UGCUCCCAUGAGCAAAAUCAAUCCAGACCACACCCUCCACAUCCAACGGUGCUGCGUCAGGGGGAUUUUUGUAAAAUGU C    U   |||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    U   UGCAUAGAACACUCGUUCCU G  AC ACGAGGGUACUCGUUUUAGUUAGGUCUGGUGUGGGAGGUGUAGGUUGCCACGACGCAGUCCCCCUAAAAACAUUUUACA G    G CU                    G CA  C                                                                               A AAAC
Stem-loop sequence	ACGUAUCUUGUGAGCAAGGAGCCCUGCUGCUCCCAUGAGCAAAAUCAAUCCAGACCACACCCUCCACAUCCAACGGUGCUGCGUCAGGGGGAUUUUUGUAAAAUGUACAGAGUUGCAAAGAACAUUUUACAAAAAUCCCCCUGACGCAGCACCGUUGGAUGUGGAGGGUGUGGUCUGGAUUGAUUUUGCUCAUGGGAGCACCAACGGUCCUUGCUCACAAGAUACGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539811.1	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   |||||||||||||||=||||||||* targets:1726   AGGGCUCCUUGCUCAUAAGAUACGG   1750 Target Full Sequence	2.5	PREDICTED: Zea mays anthocyanidin 3-O-glucoside 6''-O-acyltransferase (LOC103631128), mRNA	NA	coding protein	psRNATarget
BT067022.1	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   ||*||||||||||||=||||||||* targets:1172   AGAGCUCCUUGCUCAUAAGAUACGG   1196 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0156K10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542666.1	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   ||*|||||||||*|||||||||||* targets:110   AGCGCUCCUUGCGCACAAGAUACGG   134 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634737 (LOC103634737), mRNA	NA	coding protein	psRNATarget
XM_008681149.2	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   |**|||||||||*|||||||||||| targets:735   AACGCUCCUUGCGCACAAGAUACGU   759 Target Full Sequence	1.5	PREDICTED: Zea mays mini zinc finger protein 1 (LOC103654311), mRNA	NA	coding protein	psRNATarget
BT068083.1	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   |**|||||||||*|||||||||||| targets:134   AACGCUCCUUGCGCACAAGAUACGU   158 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044A14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660409.2	ncRNA:25   UCCCGAGGAACGAGUGUUCUAUGCA   1   |**|||||||||*|||||||||||| targets:1411   AACGCUCCUUGCGCACAAGAUACGU   1435 Target Full Sequence	1.5	PREDICTED: Zea mays homeodomain-leucine zipper transcription factor TaHDZipI-1 (LOC100282963), transcript variant X1, mRNA	NA	coding protein	psRNATarget