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BaseInfo

ncRNA ID novel_zma_miR9319
Species Zea mays
Class miRNA
Genome position Chr9:112903302-112903466 [-]
Reference genome RefGen_v4
Source SRR4237223
Length 24
Mature sequence(if miRNA) 1 - ACGCCUCGGCCCUCCUGUAUGCGC - 24
Stem-loop(if miRNA) --                   G      C              CCC                 -UA   A  UA   CG   CU
  GCGUACAGGAGGGCUGAGG CGUGCU GGGGUGUUAUUGCA   UGGGUGCAUUCAAUAUA   UAU UA  CGG  GCA  A
  ||||||||||||||||||| |||||| ||||||||||||||   |||||||||||||||||   ||| ||  |||  |||
  CGUAUGUCCUCCCGGCUCC GCACGA CCCCACAAUAACGU   ACCCACGUAAGUUAUAU   AUA GU  GUC  CGU  A
CG                   -      A              -CC                 CUC   C  GG   CA   AA
Stem-loop sequence GCGUACAGGAGGGCUGAGGGCGUGCUCGGGGUGUUAUUGCACCCUGGGUGCAUUCAAUAUAUAUAUAUAUACGGCGGCACUAAAAUGCACCUGGGUGCAUACUCUAUAUUGAAUGCACCCACCUGCAAUAACACCCCAAGCACGCCUCGGCCCUCCUGUAUGCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU964855.1
ncRNA:24   CGC-GUAUGUCCUCCCGGCUCCGCA   1
  |||-==|||||||||||*||||||*
targets:1047   GCGGUGUACAGGAGGGCGGAGGCGG   1071

2.5 Zea mays clone 282116 mRNA sequence NA coding protein psRNATarget