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BaseInfo

ncRNA ID	novel_zma_miR9316
Species	Zea mays
Class	miRNA
Genome position	Chr8:138776405-138776466 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	23
Mature sequence(if miRNA)	1 - ACGACGACCGCGCGAGCGCCGCC - 23
Stem-loop(if miRNA)	--       -C   GCGAGCGCCGCCGACUC   ACGACGA  CGC                 C   |||||||  |||                 C   UGCUGCU  CGG                 U CG       UC   CUCCGUGGACUACGUCA
Stem-loop sequence	ACGACGACCGCGCGAGCGCCGCCGACUCCCUACUGCAUCAGGUGCCUCGGCCUUCGUCGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001149840.1	ncRNA:23   CCGCCGCGA-GCGCGCCAGCAGCA   1   *|||||||*-|||||||||||||| targets:451   CGCGGCGCCACGCGCGGUCGUCGU   474 Target Full Sequence	3.0	Zea mays uncharacterized LOC100275875 (LOC100275875), mRNA	NA	coding protein	psRNATarget
EU958459.1	ncRNA:23   CCGCCGCGA-GCGCGCCAGCAGCA   1   *|||||||*-|||||||||||||| targets:451   CGCGGCGCCACGCGCGGUCGUCGU   474 Target Full Sequence	3.0	Zea mays clone 1692370 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149820.2	ncRNA:23   CCGCCGCGA-GCGCGCCAGCAGCA   1   *|||||||*-|||||||||||||| targets:540   CGCGGCGCCACGCGCGGUCGUCGU   563 Target Full Sequence	3.0	Zea mays OJ000126_13.10 protein (LOC100275828), mRNA	NA	coding protein	psRNATarget
EU958259.1	ncRNA:23   CCGCCGCGA-GCGCGCCAGCAGCA   1   *|||||||*-|||||||||||||| targets:541   CGCGGCGCCACGCGCGGUCGUCGU   564 Target Full Sequence	3.0	Zea mays clone 1681916 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147164.1	ncRNA:23   CCG-CCGCGAGCGCGCCAGCAGCA   1   |||-||||||||||||||*||||* targets:669   GGCCGGCGCUCGCGCGGUGGUCGA   692 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272711 (umc2194), mRNA	NA	coding protein	psRNATarget
BT039218.1	ncRNA:23   CCG-CCGCGAGCGCGCCAGCAGCA   1   |||-||||||||||||||*||||* targets:669   GGCCGGCGCUCGCGCGGUGGUCGA   692 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0001H02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346778.1	ncRNA:23   CCG-CCGCGAGCGCGCCAGCAGCA   1   |||-||||||||||||||*||||* targets:1282   GGCCGGCGCUCGCGCGGUGGUCGA   1305 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272711 (umc2194), mRNA	NA	coding protein	psRNATarget
BT039602.1	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   ||=|||||*||||||*||||||| targets:1561   GGUGGCGCGCGCGCGCUCGUCGU   1583 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0034A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147309.1	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   ||=|||||*||||||*||||||| targets:1561   GGUGGCGCGCGCGCGCUCGUCGU   1583 Target Full Sequence	2.5	Zea mays putative FAD-binding Berberine family protein (LOC100272856), mRNA	NA	coding protein	psRNATarget
NM_001310741.1	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   |||||||**|||||||||||||* targets:88   GGCGGCGGCCGCGCGGUCGUCGG   110 Target Full Sequence	3.0	Zea mays glycosyltransferase (pglcat8), mRNA	NA	coding protein	psRNATarget
AJ969065.1	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   |||||||**|||||||||||||* targets:88   GGCGGCGGCCGCGCGGUCGUCGG   110 Target Full Sequence	3.0	Zea mays mRNA for glycosyltransferase (pglcat8 gene)	NA	coding protein	psRNATarget
XM_020537591.1	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   |||||||**|||||||||||||* targets:375   GGCGGCGGCCGCGCGGUCGUCGG   397 Target Full Sequence	3.0	PREDICTED: Zea mays glycosyltransferase (pglcat8), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670467.2	ncRNA:23   CCGCCGCGAGCGCGCCAGCAGCA   1   **=||||=||||||*|||||||| targets:1274   CCUGGCGUUCGCGCCGUCGUCGU   1296 Target Full Sequence	2.5	PREDICTED: Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC103645760), mRNA	NA	coding protein	psRNATarget