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BaseInfo

ncRNA ID	novel_zma_miR9311
Species	Zea mays
Class	miRNA
Genome position	Chr8:111481364-111481487 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	101 - AUUAGACAGCAAACCAAACAGGCC - 124
Stem-loop(if miRNA)	--              -GG    CUAC  CACACUUUAAAUAAGAUUAGUCAUUUGAAUUGAA   CUUGUUUGGUUUGU   CUAA    GU                                  G   ||||||||||||||   ||||    ||                                  A   GGACAAACCAAACG   GAUU    AC                                  A CC              ACA    --AA  AAUGUAAAACAGUAUGAAAAUACAAAUUCCAAUC
Stem-loop sequence	CUUGUUUGGUUUGUGGCUAACUACGUCACACUUUAAAUAAGAUUAGUCAUUUGAAUUGAAGAACUAACCUUAAACAUAAAAGUAUGACAAAAUGUAACAAAUUAGACAGCAAACCAAACAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT033899.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   *||||||||||||||||||||||| targets:942   AGCCUGUUUGGUUUGCUGUCUAAU   965 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0124C10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137142.2	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   *||||||||||||||||||||||| targets:1006   AGCCUGUUUGGUUUGCUGUCUAAU   1029 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100191713), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   |||||||||||||||*|||||||* targets:1468   GGCCUGUUUGGUUUGGUGUCUAAC   1491 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=||||||||||||*|||||||* targets:2992   GGUCUGUUUGGUUUGAUGUCUAAC   3015 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=||||||||||||*|||||||* targets:3120   GGUCUGUUUGGUUUGAUGUCUAAC   3143 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=||||||||||||*|||||||* targets:3127   GGUCUGUUUGGUUUGAUGUCUAAC   3150 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EZ057573.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*||||||||||*|||||||||| targets:235   GGACUGUUUGGUUCGCUGUCUAAU   258 Target Full Sequence	1.5	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
EU945129.1	ncRNA:24   CC---GGACAAACCAAACGACAGAUUA   1   ||---=||||||||||*|||||||||| targets:529   GGAUAUCUGUUUGGUUCGCUGUCUAAU   555 Target Full Sequence	1.5	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   CC-GGACAAACCAAACGACAGAUUA   1   ||-==|||||||||*|||||||||| targets:3579   GGAUUUGUUUGGUUCGCUGUCUAAU   3603 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
BT087785.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*|||||||||||*||||||||* targets:778   GGGCUGUUUGGUUUACUGUCUAAG   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0202I19 mRNA, complete cds	NA	coding protein	psRNATarget
BT040570.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*|||||||||||*||||||||* targets:1030   GGGCUGUUUGGUUUACUGUCUAAG   1053 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0100O18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147684.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*|||||||||||*||||||||* targets:1030   GGGCUGUUUGGUUUACUGUCUAAG   1053 Target Full Sequence	2.5	Zea mays AUX/IAA transcription factor (AUX27), mRNA	NA	coding protein	psRNATarget
EU962427.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*|||||||||||*||||||||* targets:1090   GGGCUGUUUGGUUUACUGUCUAAG   1113 Target Full Sequence	2.5	Zea mays clone 242533 mRNA sequence	NA	coding protein	psRNATarget
XM_008678580.2	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||*|||||||||||*||||||||* targets:1139   GGGCUGUUUGGUUUACUGUCUAAG   1162 Target Full Sequence	2.5	PREDICTED: Zea mays AUX/IAA transcription factor (AUX27), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001151629.1	ncRNA:24   CCG-GACAAACCAAACGACAGAUUA   1   *||-=|||||||||||||||=|||* targets:2290   AGCAUUGUUUGGUUUGCUGUUUAAA   2314 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278316 (si946092e03), mRNA	NA	coding protein	psRNATarget
EU972964.1	ncRNA:24   CCG-GACAAACCAAACGACAGAUUA   1   *||-=|||||||||||||||=|||* targets:2290   AGCAUUGUUUGGUUUGCUGUUUAAA   2314 Target Full Sequence	2.5	Zea mays clone 390894 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=*|||||||||*|||||||||* targets:3   GGUAUGUUUGGUUCGCUGUCUAAC   26 Target Full Sequence	2.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=*|||||||||*|||||||||* targets:3   GGUAUGUUUGGUUCGCUGUCUAAC   26 Target Full Sequence	2.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   CCGGACAAACCAAACGACAGAUUA   1   ||=*|||||||||*|||||||||* targets:3   GGUAUGUUUGGUUCGCUGUCUAAC   26 Target Full Sequence	2.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget