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BaseInfo

ncRNA ID novel_zma_miR9302
Species Zea mays
Class miRNA
Genome position Chr7:14390850-14390943 [+]
Reference genome RefGen_v4
Source SRR4237223
Length 24
Mature sequence(if miRNA) 71 - AAUACAUGUGGAUUGAGAUCAAUA - 94
Stem-loop(if miRNA) --    C C                        -         A   
  UUGA C UAAUCCACAUGUGUUGAGGUGGAU GGGGUGUAA UUAG
  |||| | |||||||||||||||||||||||| ||||||||| |||U
  AACU G GUUAGGUGUACAUAACUCCACCUA CUCCACAUU AAUU
AU    A A                        A         A   
Stem-loop sequence UUGACCCUAAUCCACAUGUGUUGAGGUGGAUGGGGUGUAAAUUAGUUUAAAUUACACCUCAAUCCACCUCAAUACAUGUGGAUUGAGAUCAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402966.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||||||||||=|||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.5 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||||||||||=|||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.5 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||||||||||=|||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.5 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
JB163478.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|||||||||||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|||||||||||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|||||||||||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
XM_020543503.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:1815   UAUUGACCUCAAUCCACAUGUGUU   1838

2.5 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543504.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:1814   UAUUGACCUCAAUCCACAUGUGUU   1837

2.5 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001112411.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  |*||||||||||||||=|||||||
targets:1624   UUUUGAUCUCAAUCCAUAUGUAUU   1647

1.5 Zea mays uncharacterized LOC732794 (IDP506), mRNA NA coding protein psRNATarget
AF277454.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  |*||||||||||||||=|||||||
targets:1624   UUUUGAUCUCAAUCCAUAUGUAUU   1647

1.5 Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds NA coding protein psRNATarget
BT019068.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|||||||=|||||||||
targets:168   UAUUGAGCUCAAUCUACAUGUAUU   191

2.5 Zea mays clone Contig631.F mRNA sequence NA coding protein psRNATarget
HI403262.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
HI403321.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
HI403263.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
HI403229.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
JB163781.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
JB163780.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
JB163690.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403319.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163837.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403320.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
HI403376.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
JB163782.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:6   UAUUGACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:5   UAUUGACCUCAAUCCACAUGUGUU   28

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:5   UAUUGACCUCAAUCCACAUGUGUU   28

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
HI403075.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||||||=||
targets:5   UAUUGACCUCAAUCCACAUGUGUU   28

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
HI406952.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*||||||||||||||||=||
targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28

1.5 Sequence 5077 from Patent EP2074227 NA coding protein psRNATarget
LQ239082.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*||||||||||||||||=||
targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28

1.5 Sequence 5077 from Patent EP2985353 NA coding protein psRNATarget
JB167413.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*||||||||||||||||=||
targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28

1.5 Sequence 5077 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *|||||*|||||||||||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
JB163411.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *|||||*|||||||||||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *|||||*|||||||||||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
LQ239375.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||*||||||
targets:20   UAUUGACCUCAAUCCACUUGUAUU   43

2.5 Sequence 5370 from Patent EP2985353 NA coding protein psRNATarget
JB167706.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||*||||||
targets:20   UAUUGACCUCAAUCCACUUGUAUU   43

2.5 Sequence 5370 from Patent EP2559767 NA coding protein psRNATarget
HI407245.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*||||||||||*||||||
targets:20   UAUUGACCUCAAUCCACUUGUAUU   43

2.5 Sequence 5370 from Patent EP2074227 NA coding protein psRNATarget
JB163470.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
HI403009.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
JB163512.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  |||*||||*|||||||||||||||
targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28

1.0 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  |||*||||*|||||||||||||||
targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28

1.0 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
HI403051.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  |||*||||*|||||||||||||||
targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28

1.0 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
JB163457.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
HI402996.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*|||||||||||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
XM_020540612.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||=||||||||||
targets:1707   UAUUAACCUCAAUUCACAUGUAUU   1730

2.5 PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||=||||||||||
targets:858   UAUUAACCUCAAUUCACAUGUAUU   881

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
EU955100.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||=||||||||||
targets:638   UAUUAACCUCAAUUCACAUGUAUU   661

2.5 Zea mays clone 1509994 membrane protein mRNA, complete cds NA coding protein psRNATarget
NM_001326691.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||=||||||||||
targets:638   UAUUAACCUCAAUUCACAUGUAUU   661

2.5 Zea mays membrane protein (LOC100381468), mRNA NA coding protein psRNATarget
LQ235491.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||||||||||=||
targets:6   UAUUAACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
HI403361.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||||||||||=||
targets:6   UAUUAACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
JB163822.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||*|*||||||||||||||=||
targets:6   UAUUAACCUCAAUCCACAUGUGUU   29

2.5 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
HI403486.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|*=||||||||||||||
targets:2   UAUUGACCCUAAUCCACAUGUAUU   25

3.0 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
JB163947.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|*=||||||||||||||
targets:2   UAUUGACCCUAAUCCACAUGUAUU   25

3.0 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|*=||||||||||||||
targets:2   UAUUGACCCUAAUCCACAUGUAUU   25

3.0 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
XM_008677341.2
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *|*|*|||||||||||||||||||
targets:2912   CAAUCAUCUCAAUCCACAUGUAUU   2935

0.0 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
XM_020550625.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *|*|*|||||||||||||||||||
targets:2896   CAAUCAUCUCAAUCCACAUGUAUU   2919

0.0 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget
LQ235067.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *||*||*|||||||||||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
HI402937.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *||*||*|||||||||||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
JB163398.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  *||*||*|||||||||||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.0 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
EZ063549.1
ncRNA:24   AUAACUAGAGUUAGGUGUACAUAA   1
  ||||||*|**||||||||||||||
targets:92   UAUUGACCAAAAUCCACAUGUAUU   115

3.0 TSA: Zea mays contig64671, mRNA sequence NA coding protein psRNATarget
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