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BaseInfo

ncRNA ID	novel_zma_miR9300
Species	Zea mays
Class	miRNA
Genome position	Chr7:144508576-144508673 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	1 - GGCGUCUUUGCCGAGUGUCAUCCG - 24
Stem-loop(if miRNA)	--GGCG                UCC  GG              AU  UG       UCUUUGCCGAGUGUCA   GG  GACACUCGGCAAAG  UA  U       ||||||||||||||||   ||  ||||||||||||||  ||       AGAAACGGCUCACAGU   CC  CUGUGAGCCGUUUC  AU  C UUCUCA                UUA  AA              AC  UA
Stem-loop sequence	GGCGUCUUUGCCGAGUGUCAUCCGGGGGACACUCGGCAAAGAUUAUGUCAUUACACUUUGCCGAGUGUCAACCAUUUGACACUCGGCAAAGAACUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680068.2	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =**=||||||||||||||||||=| targets:44   UCCGUGACACUCGGCAAAGACGUC   67 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
JB166664.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   |**|*||||||||||||||||||| targets:69   CCUAAGACACUCGGCAAAGACGCC   92 Target Full Sequence	0.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
HI406203.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   |**|*||||||||||||||||||| targets:69   CCUAAGACACUCGGCAAAGACGCC   92 Target Full Sequence	0.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   |**|*||||||||||||||||||| targets:69   CCUAAGACACUCGGCAAAGACGCC   92 Target Full Sequence	0.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   |||=*|||||||||||||||*||= targets:1504   CGGGCGACACUCGGCAAAGAAGCU   1527 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
LQ238871.1	ncRNA:24   GCCU---ACUGUGAGCCGUUUCUGCGG   1   =||=---||=|||||||||||||*||| targets:114   UGGGCUUUGGCACUCGGCAAAGAAGCC   140 Target Full Sequence	2.5	Sequence 4866 from Patent EP2985353	NA	coding protein	psRNATarget
HI406741.1	ncRNA:24   GCCU---ACUGUGAGCCGUUUCUGCGG   1   =||=---||=|||||||||||||*||| targets:114   UGGGCUUUGGCACUCGGCAAAGAAGCC   140 Target Full Sequence	2.5	Sequence 4866 from Patent EP2074227	NA	coding protein	psRNATarget
JB167202.1	ncRNA:24   GCCU---ACUGUGAGCCGUUUCUGCGG   1   =||=---||=|||||||||||||*||| targets:114   UGGGCUUUGGCACUCGGCAAAGAAGCC   140 Target Full Sequence	2.5	Sequence 4866 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =**=||=|||||||||||||*||| targets:20   UAUGUGGCACUCGGCAAAGAAGCC   43 Target Full Sequence	2.5	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =**=||=|||||||||||||*||| targets:20   UAUGUGGCACUCGGCAAAGAAGCC   43 Target Full Sequence	2.5	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =**=||=|||||||||||||*||| targets:20   UAUGUGGCACUCGGCAAAGAAGCC   43 Target Full Sequence	2.5	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI406969.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =||--||||||||||||||||*|| targets:73   UGG--GACACUCGGCAAAGACUCC   94 Target Full Sequence	1.5	Sequence 5094 from Patent EP2074227	NA	coding protein	psRNATarget
JB167430.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =||--||||||||||||||||*|| targets:73   UGG--GACACUCGGCAAAGACUCC   94 Target Full Sequence	1.5	Sequence 5094 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239099.1	ncRNA:24   GCCUACUGUGAGCCGUUUCUGCGG   1   =||--||||||||||||||||*|| targets:73   UGG--GACACUCGGCAAAGACUCC   94 Target Full Sequence	1.5	Sequence 5094 from Patent EP2985353	NA	coding protein	psRNATarget
BT063684.1	ncRNA:24   GCCU-ACUGUGAGCCGUUUCUGCGG   1   **||-||||||||||||||||*||= targets:1267   ACGACUGACACUCGGCAAAGAGGCU   1291 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175015.1	ncRNA:24   GCCU-ACUGUGAGCCGUUUCUGCGG   1   **||-||||||||||||||||*||= targets:1267   ACGACUGACACUCGGCAAAGAGGCU   1291 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA	NA	coding protein	psRNATarget