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BaseInfo

ncRNA ID	novel_zma_miR9299
Species	Zea mays
Class	miRNA
Genome position	Chr4:102957929-102957983 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - ACCUGAAUUUGGUGGAUAUCGGAA - 24
Stem-loop(if miRNA)	---A           U  A   CG  AA     CCUGAAUUUGG GG UAU  GA  A     ||||||||||| || |||  ||  C     GGACUUAAAUC CC AUA  UU  A UGUG           -  C   UU  AA
Stem-loop sequence	ACCUGAAUUUGGUGGAUAUCGGAAAACAAAUUUUAUACCCCUAAAUUCAGGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947799.1	ncRNA:24   AAGGCU-AUAGGUGGUUUAAGUCCA   1   ||||*|-|||||||||||||||||| targets:258   UUCCUAAUAUCCACCAAAUUCAGGU   282 Target Full Sequence	2.0	Zea mays clone 359866 mRNA sequence	NA	coding protein	psRNATarget
EU975442.1	ncRNA:24   AAGGCUAUAGGUGGUUUAAGUCCA   1   *||=*=|||||||||||||||||| targets:2023   CUCUAGUAUCCACCAAAUUCAGGU   2046 Target Full Sequence	1.0	Zea mays clone 490558 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151964.1	ncRNA:24   AAGGCUAUAGGUGGUUUAAGUCCA   1   *||=*=|||||||||||||||||| targets:2023   CUCUAGUAUCCACCAAAUUCAGGU   2046 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278809 (LOC100278809), mRNA	NA	coding protein	psRNATarget
EU940959.1	ncRNA:24   AAGGCUAUAGGUGGUUUAAGUCCA   1   |||=*||||||||||||||||*|| targets:245   UUCUAAUAUCCACCAAAUUCAUGU   268 Target Full Sequence	1.5	Zea mays clone 1222375 mRNA sequence	NA	coding protein	psRNATarget
EU943180.1	ncRNA:24   AAGGCUAU-AGGUGGUUUAAGUCCA   1   ||=|*|||-|*|||||||||||||| targets:1662   UUUCAAUAAUACACCAAAUUCAGGU   1686 Target Full Sequence	3.0	Zea mays clone 1579524 mRNA sequence	NA	coding protein	psRNATarget
XM_008654188.2	ncRNA:24   AAGGCUAUAGGUGGUUUAAGUCCA   1   *|==*|||*=|||||||||||||| targets:1200   CUUUAAUACUCACCAAAUUCAGGU   1223 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103632369 (LOC103632369), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654189.2	ncRNA:24   AAGGCUAUAGGUGGUUUAAGUCCA   1   *|==*|||*=|||||||||||||| targets:1420   CUUUAAUACUCACCAAAUUCAGGU   1443 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103632369 (LOC103632369), transcript variant X2, mRNA	NA	coding protein	psRNATarget