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BaseInfo

ncRNA ID	novel_zma_miR9298
Species	Zea mays
Class	miRNA
Genome position	Chr1:223241839-223242009 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	24
Mature sequence(if miRNA)	148 - AUUAGUCCCUUGAAACCAAACACC - 171
Stem-loop(if miRNA)	--           U          U          A            U      UCCA                   C     C   UGUUUGGUUUC AGGGACUAAU UUUAGUCUCU CAUUUUAUUCCA UUUAGU    AAAUUGCCAAAUAUGGAAA UAAAA U   ||||||||||| |||||||||| |||||||||| |||||||||||| ||||||    ||||||||||||||||||| ||||| C   ACAAACCAAAG UCCCUGAUUA AAAUCAGGGA GUAAAAUAAGGU AAAUCA    UUUAACGGUUUAUAUCUUU AUUUU U CC           U          C          A            U      UAUA                   A     A
Stem-loop sequence	UGUUUGGUUUCUAGGGACUAAUUUUUAGUCUCUACAUUUUAUUCCAUUUUAGUUCCAAAAUUGCCAAAUAUGGAAACUAAAACUCUAUUUUAAUUUCUAUAUUUGGCAAUUUAUAUACUAAAUUGGAAUAAAAUGAAGGGACUAAACAUUAGUCCCUUGAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403047.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82 Target Full Sequence	1.5	Sequence 1172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235177.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82 Target Full Sequence	1.5	Sequence 1172 from Patent EP2985353	NA	coding protein	psRNATarget
JB163508.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82 Target Full Sequence	1.5	Sequence 1172 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26 Target Full Sequence	1.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26 Target Full Sequence	1.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26 Target Full Sequence	1.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:464   GGUGUUUGGUUUCUAGGGACUAAU   487 Target Full Sequence	1.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:751   GGUGUUUGGUUUCUAGGGACUAAU   774 Target Full Sequence	1.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:551   GGUGUUUGGUUUCUAGGGACUAAU   574 Target Full Sequence	1.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
NM_001313850.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161 Target Full Sequence	1.5	Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA	NA	coding protein	psRNATarget
BT088358.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1136   GGUGUUUGGUUUCUAGGGACUAAU   1159 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1148   GGUGUUUGGUUUCUAGGGACUAAU   1171 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1154   GGUGUUUGGUUUCUAGGGACUAAU   1177 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168 Target Full Sequence	1.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:971   GGUGUUUGGUUUCUAGGGACUAAU   994 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:919   GGUGUUUGGUUUCUAGGGACUAAU   942 Target Full Sequence	1.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1241   GGUGUUUGGUUUCUAGGGACUAAU   1264 Target Full Sequence	1.5	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1192   GGUGUUUGGUUUCUAGGGACUAAU   1215 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1540   GGUGUUUGGUUUCUAGGGACUAAU   1563 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542419.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:2143   GGUGUUUGGUUUCUAGGGACUAAU   2166 Target Full Sequence	1.5	PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA	NA	coding protein	psRNATarget
XM_020550311.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:2446   GGUGUUUGGUUUCUAGGGACUAAU   2469 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1921   GGUGUUUGGUUUCUAGGGACUAAU   1944 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU941753.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:3   GGAUGUUUGGUUUCUAGGGACUAAU   27 Target Full Sequence	1.5	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:558   GGAUGUUUGGUUUCUAGGGACUAAU   582 Target Full Sequence	1.5	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:3402   GGAUGUUUGGUUUCUAGGGACUAAU   3426 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:3477   GGAUGUUUGGUUUCUAGGGACUAAU   3501 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:3527   GGAUGUUUGGUUUCUAGGGACUAAU   3551 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:24   CC-ACAAACCAAAGUUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:3564   GGAUGUUUGGUUUCUAGGGACUAAU   3588 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |*|||||||||||*|||||||||| targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |*|||||||||||*|||||||||| targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |*|||||||||||*|||||||||| targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24 Target Full Sequence	1.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   CCA---CAAACCAAAGUUCCCUGAUUA   1   |||---||||||||||*|||||||||| targets:760   GGUCAUGUUUGGUUUCUAGGGACUAAU   786 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   ||||*||||||||*|||||||||| targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   ||||*||||||||*|||||||||| targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809 Target Full Sequence	1.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   CCA---CAAACCAAAGUUCCCUGAUUA   1   |||---||||||||||*|||||||||| targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   CCA---CAAACCAAAGUUCCCUGAUUA   1   |||---||||||||||*|||||||||| targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
AY105187.1	ncRNA:24   CCA-CAAACCAAAGUUCCCUGAUUA   1   |||-|||||||||||*||||||||* targets:277   GGUUGUUUGGUUUCAUGGGACUAAA   301 Target Full Sequence	2.5	Zea mays PCO067049 mRNA sequence	NA	coding protein	psRNATarget
EU969631.1	ncRNA:24   CCA-CAAACCAAAGUUCCCUGAUUA   1   |||-|||||||||||*||||||||* targets:619   GGUUGUUUGGUUUCAUGGGACUAAA   643 Target Full Sequence	2.5	Zea mays clone 333378 BCL-2 binding anthanogene-1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157668.1	ncRNA:24   CCA-CAAACCAAAGUUCCCUGAUUA   1   |||-|||||||||||*||||||||* targets:619   GGUUGUUUGGUUUCAUGGGACUAAA   643 Target Full Sequence	2.5	Zea mays BCL-2 binding anthanogene-1 (pco067049), mRNA	NA	coding protein	psRNATarget
EU947016.1	ncRNA:24   CCA-CAAACCAAAGUUCCCUGAUUA   1   |||-|||||||||||*||||||||* targets:276   GGUUGUUUGGUUUCAUGGGACUAAA   300 Target Full Sequence	2.5	Zea mays clone 326144 mRNA sequence	NA	coding protein	psRNATarget
NM_001154575.2	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |*|||||||||||*|||||||||* targets:1860   GAUGUUUGGUUUCUAGGGACUAAA   1883 Target Full Sequence	2.5	Zea mays uncharacterized LOC100281656 (si605087c09), mRNA	NA	coding protein	psRNATarget
EU957463.1	ncRNA:24   CCACAAACCAAAGUUCCCUGAUUA   1   |*|||||||||||*|||||||||* targets:1861   GAUGUUUGGUUUCUAGGGACUAAA   1884 Target Full Sequence	2.5	Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds	NA	coding protein	psRNATarget
JB163522.1	ncRNA:23   CAC-AAACCAAAGUUCCCUGAUUA   1   |||-|||*|||||*|||||||||| targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24 Target Full Sequence	2.5	Sequence 1186 from Patent EP2559767	NA	coding protein	psRNATarget
HI403061.1	ncRNA:23   CAC-AAACCAAAGUUCCCUGAUUA   1   |||-|||*|||||*|||||||||| targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24 Target Full Sequence	2.5	Sequence 1186 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235191.1	ncRNA:23   CAC-AAACCAAAGUUCCCUGAUUA   1   |||-|||*|||||*|||||||||| targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24 Target Full Sequence	2.5	Sequence 1186 from Patent EP2985353	NA	coding protein	psRNATarget