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BaseInfo

ncRNA ID novel_zma_miR9291
Species Zea mays
Class miRNA
Genome position Chr7:19457000-19457127 [-]
Reference genome RefGen_v4
Source SRR4237223
Length 24
Mature sequence(if miRNA) 105 - UUUAGAGCUGAUUUGGUGACCCGG - 128
Stem-loop(if miRNA) --UUU  A              --CC     C      A        A A    A       UUA
     AG GCUGAUUUGGUGAC    GGAUC CGGGAG AUUGGAGG G UUGA GGGGAAA   G
     || ||||||||||||||    ||||| |||||| |||||||| | |||| |||||||   U
     UC CGACUAAACCACUG    CCUAG GCCCUC UAACCUCC C AACU CCCCUUU   U
CGAAU  C              UUCA     U      C        C C    -       UAC
Stem-loop sequence UUUAGAGCUGAUUUGGUGACCCGGAUCCCGGGAGAAUUGGAGGAGAUUGAAGGGGAAAUUAGUUCAUUUUCCCCUCAACCCCCUCCAAUCCUCCCGUGAUCCACUUGUCACCAAAUCAGCCCUUAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950017.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||||||||||||||||||*|||||
targets:515   CCGGGUCACCAAAUCAGCCCUAAA   538

1.5 Zea mays clone 457681 mRNA sequence NA coding protein psRNATarget
EU967725.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||*|||||||||||||||||||||
targets:1135   CCCGGUCACCAAAUCAGCUCUAAA   1158

0.0 Zea mays clone 305590 mRNA sequence NA coding protein psRNATarget
XM_020540504.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||||||||||||||||||*||||*
targets:1880   CCGGGUCACCAAAUCAGCCCUAAU   1903

2.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||||||||||||||||||*||||*
targets:2318   CCGGGUCACCAAAUCAGCCCUAAU   2341

2.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001352049.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||*|||||=||||||||||||||=
targets:582   CCUGGUCAUCAAAUCAGCUCUAAG   605

2.0 Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA NA coding protein psRNATarget
XM_020547779.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||*|||||=||||||||||||||=
targets:610   CCUGGUCAUCAAAUCAGCUCUAAG   633

2.0 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547780.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||*|||||=||||||||||||||=
targets:612   CCUGGUCAUCAAAUCAGCUCUAAG   635

2.0 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667438.2
ncRNA:24   GGC--CCAGUGGUUUAGUCGAGAUUU   1
  =||--||||||||||||||||||||*
targets:3568   UCGCUGGUCACCAAAUCAGCUCUAAU   3593

1.0 PREDICTED: Zea mays BRCA1 C Terminus domain containing protein expressed (LOC103644241), transcript variant X1, mRNA NA coding protein psRNATarget
BT088155.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  |||**|||||||||||||||||||
targets:1496   CCGAAUCACCAAAUCAGCUCUAAA   1519

0.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
BT064897.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||**||||||||||||||||||||
targets:2180   CCUCGUCACCAAAUCAGCUCUAAA   2203

0.0 Zea mays full-length cDNA clone ZM_BFb0348A19 mRNA, complete cds NA coding protein psRNATarget
NM_001175341.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||**||||||||||||||||||||
targets:2180   CCUCGUCACCAAAUCAGCUCUAAA   2203

0.0 Zea mays uncharacterized LOC100382616 (LOC100382616), mRNA NA coding protein psRNATarget
XM_008671854.2
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||*|||||||||||||||*|||||
targets:73   CCCGGUCACCAAAUCAGCCCUAAA   96

1.5 PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA NA coding protein psRNATarget
EU956986.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ||**||||||||||||||||||=|
targets:2307   CCUCGUCACCAAAUCAGCUCUAGA   2330

1.5 Zea mays clone 1579656 mRNA sequence NA coding protein psRNATarget
AF244696.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  |***|||||||||||||||||=||
targets:866   CAUAGUCACCAAAUCAGCUCUGAA   889

1.5 Zea mays glutathione S-transferase GST 31 mRNA, complete cds NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  *|**||||||||||||||*|||||
targets:165   ACUUGUCACCAAAUCAGCCCUAAA   188

1.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  *|**||||||||||||||*|||||
targets:165   ACUUGUCACCAAAUCAGCCCUAAA   188

1.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  *|**||||||||||||||*|||||
targets:165   ACUUGUCACCAAAUCAGCCCUAAA   188

1.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
NM_001138057.3
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ***|||**||||||||||||||||
targets:1266   AAUGGUACCCAAAUCAGCUCUAAA   1289

2.0 Zea mays LHY protein (LOC100192868), mRNA NA coding protein psRNATarget
EU954568.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ***|||**||||||||||||||||
targets:1267   AAUGGUACCCAAAUCAGCUCUAAA   1290

2.0 Zea mays clone 1470263 LHY protein mRNA, complete cds NA coding protein psRNATarget
XM_008663163.2
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ***|||**||||||||||||||||
targets:1439   AAUGGUACCCAAAUCAGCUCUAAA   1462

2.0 PREDICTED: Zea mays LHY protein (LOC100192868), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544868.1
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ***|||**||||||||||||||||
targets:1559   AAUGGUACCCAAAUCAGCUCUAAA   1582

2.0 PREDICTED: Zea mays LHY protein (LOC100192868), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008663161.2
ncRNA:24   GGCCCAGUGGUUUAGUCGAGAUUU   1
  ***|||**||||||||||||||||
targets:1522   AAUGGUACCCAAAUCAGCUCUAAA   1545

2.0 PREDICTED: Zea mays LHY protein (LOC100192868), transcript variant X1, mRNA NA coding protein psRNATarget
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