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BaseInfo

ncRNA ID	novel_zma_miR9274
Species	Zea mays
Class	miRNA
Genome position	Chr6:151824513-151824615 [+]
Reference genome	RefGen_v4
Source	SRR4237223
Length	21
Mature sequence(if miRNA)	83 - AUAUAUCUAAAGUUGCAAUCU - 103
Stem-loop(if miRNA)	--AUUA                 -------   U     CUCA    C     AGU       CAACUUUAGAUAUAUAC       CAU GCUAU    CUCC ACAUG   C       |||||||||||||||||       ||| |||||    |||| |||||   A       GUUGAAAUCUAUAUAUG       GUA UGAUA    GAGG UGUAC   A UCUAAC                 AUAAUAU   -     -ACC    -     AGU
Stem-loop sequence	AUUACAACUUUAGAUAUAUACCAUUGCUAUCUCACUCCCACAUGAGUCAAUGACAUGUGGAGCCAAUAGUAUGUAUAAUAGUAUAUAUCUAAAGUUGCAAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669273.2	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1137   AGAUUGCAACUUUAGAUAUAU   1157 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669274.2	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1128   AGAUUGCAACUUUAGAUAUAU   1148 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY105630.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1102   AGAUUGCAACUUUAGAUAUAU   1122 Target Full Sequence	0.0	Zea mays PCO073836 mRNA sequence	NA	coding protein	psRNATarget
XM_008669275.2	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1110   AGAUUGCAACUUUAGAUAUAU   1130 Target Full Sequence	0.0	PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT085518.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1091   AGAUUGCAACUUUAGAUAUAU   1111 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0028K04 mRNA, complete cds	NA	coding protein	psRNATarget
EU965045.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1093   AGAUUGCAACUUUAGAUAUAU   1113 Target Full Sequence	0.0	Zea mays clone 283433 mRNA sequence	NA	coding protein	psRNATarget
BT039634.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1105   AGAUUGCAACUUUAGAUAUAU   1125 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035I13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147320.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1105   AGAUUGCAACUUUAGAUAUAU   1125 Target Full Sequence	0.0	Zea mays Phosphomannomutase (umc2246), mRNA	NA	coding protein	psRNATarget
BT039627.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1099   AGAUUGCAACUUUAGAUAUAU   1119 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035C20 mRNA, complete cds	NA	coding protein	psRNATarget
BT063220.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||||||||||||||||| targets:1021   AGAUUGCAACUUUAGAUAUAU   1041 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0039G24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656662.2	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   |||||*||||||||||||||| targets:2162   AGAUUACAACUUUAGAUAUAU   2182 Target Full Sequence	1.0	PREDICTED: Zea mays protein binding protein (LOC100280668), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549784.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   ||||||=|||||||*|||||| targets:1058   AGAUUGUAACUUUAAAUAUAU   1078 Target Full Sequence	2.5	PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ053783.1	ncRNA:21   UCUAACGUUGAAAUCUAUAUA   1   =||||*||||||||*|||||| targets:87   GGAUUACAACUUUAAAUAUAU   107 Target Full Sequence	2.5	TSA: Zea mays contig54905, mRNA sequence	NA	coding protein	psRNATarget