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BaseInfo

ncRNA ID	novel_zma_miR9267
Species	Zea mays
Class	miRNA
Genome position	Chr10:126861403-126861570 [-]
Reference genome	RefGen_v4
Source	SRR4237223;SRR4237227
Length	21
Mature sequence(if miRNA)	1 - AACCAGAUGAUUUGUUUGCAC - 21
Stem-loop(if miRNA)	--         C        C        CGG         CG     CACAUUUAACACUUAAACCCUUCC       GCUCAAUAAUCUUUAUA   GCAAGCAAA CAUCUGGU CAUUAGAU   UGAUCCAAC  UAGGU                        ACGACCA                 A   ||||||||| |||||||| ||||||||   |||||||||  |||||                        |||||||                 A   CGUUUGUUU GUAGACCA GUAAUCUA   GCUAGGUUG  GUCUA                        UGUUGGU                 A CA         A        A        -AU         AU     ------------------------       ACCAAACAAUCCUCAAA
Stem-loop sequence	GCAAGCAAACCAUCUGGUCCAUUAGAUCGGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACGACCAGCUCAAUAAUCUUUAUAAAAAAACUCCUAACAAACCAUGGUUGUAUCUGUAGUUGGAUCGUAAUCUAAUGAACCAGAUGAUUUGUUUGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235447.1	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   ||||||||||||||||||*|* targets:27   GUGCAAACAAAUCAUCUGAUC   47 Target Full Sequence	2.5	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
HI403317.1	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   ||||||||||||||||||*|* targets:27   GUGCAAACAAAUCAUCUGAUC   47 Target Full Sequence	2.5	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
JB163778.1	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   ||||||||||||||||||*|* targets:27   GUGCAAACAAAUCAUCUGAUC   47 Target Full Sequence	2.5	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001330571.1	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   **||||*|||||||||||||| targets:2006   CAGCAACCAAAUCAUCUGGUU   2026 Target Full Sequence	1.0	Zea mays uncharacterized protein (LOC103629998), mRNA	NA	coding protein	psRNATarget
XM_020539163.1	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   **||||*|||||||||||||| targets:2298   CAGCAACCAAAUCAUCUGGUU   2318 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized protein (LOC103629998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651090.2	ncRNA:21   CACGUUUGUUUAGUAGACCAA   1   **||||*|||||||||||||| targets:2294   CAGCAACCAAAUCAUCUGGUU   2314 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized protein (LOC103629998), transcript variant X1, mRNA	NA	coding protein	psRNATarget