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BaseInfo

ncRNA ID	novel_zma_miR9256
Species	Zea mays
Class	miRNA
Genome position	Chr4:226599657-226599773 [-]
Reference genome	RefGen_v4
Source	SRR4237222;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - UACUAGAGUACUCAAACAAAGCCU - 24
Stem-loop(if miRNA)	--   C    -          A              C          -    UAAUUUA   GCU UGUU GGGUACUCUA UAUUCACCCUAAUC ACAUGUAUUA GGUG       C   ||| |||| |||||||||| |||||||||||||| |||||||||| ||||       A   CGA ACAA CUCAUGAGAU AUAAGUGGGGUUAG UGUACAUAAU CCAC       C UC   A    A          C              A          U    CUAACCC
Stem-loop sequence	GCUCUGUUGGGUACUCUAAUAUUCACCCUAAUCCACAUGUAUUAGGUGUAAUUUACACCCCAAUCCACCUUAAUACAUGUAGAUUGGGGUGAAUACUAGAGUACUCAAACAAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ080094.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||||||||||||||||||||||| targets:177   AGGCUUUGUUUGAGUACUCUAGUA   200 Target Full Sequence	0.0	TSA: Zea mays contig15733, mRNA sequence	NA	coding protein	psRNATarget
EU961632.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||||||||||||||||||||||| targets:1728   AGGCUUUGUUUGAGUACUCUAGUA   1751 Target Full Sequence	0.0	Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds	NA	coding protein	psRNATarget
EZ102361.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||=||||||||||| targets:94   AGGCUUUGUUUGGGUACUCUAGUA   117 Target Full Sequence	1.5	TSA: Zea mays contig38017, mRNA sequence	NA	coding protein	psRNATarget
BT038657.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||=||||||||||| targets:1694   AGGCUUUGUUUGGGUACUCUAGUA   1717 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0304H12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143237.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||=||||||||||| targets:1756   AGGCUUUGUUUGGGUACUCUAGUA   1779 Target Full Sequence	1.5	Zea mays Ferrochelatase (pco095974), mRNA	NA	coding protein	psRNATarget
BT037441.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||=||||||||||| targets:1756   AGGCUUUGUUUGGGUACUCUAGUA   1779 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0169H11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669126.2	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||=||||||||||| targets:1795   AGGCUUUGUUUGGGUACUCUAGUA   1818 Target Full Sequence	1.5	PREDICTED: Zea mays Ferrochelatase (pco095974), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ056756.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:182   AGGUUUUGUUUGGGUACUCUAGUA   205 Target Full Sequence	1.5	TSA: Zea mays contig57878, mRNA sequence	NA	coding protein	psRNATarget
BT069728.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:287   AGGUUUUGUUUGGGUACUCUAGUA   310 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0212B11 mRNA, complete cds	NA	coding protein	psRNATarget
EU949321.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:454   AGGUUUUGUUUGGGUACUCUAGUA   477 Target Full Sequence	1.5	Zea mays clone 401072 mRNA sequence	NA	coding protein	psRNATarget
EU328276.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:872   AGGUUUUGUUUGGGUACUCUAGUA   895 Target Full Sequence	1.5	Zea mays RFLP probe p-csu389 mRNA sequence	NA	coding protein	psRNATarget
AY107149.2	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:1230   AGGUUUUGUUUGGGUACUCUAGUA   1253 Target Full Sequence	1.5	Zea mays PCO139446 mRNA sequence	NA	coding protein	psRNATarget
BT062480.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:1402   AGGUUUUGUUUGGGUACUCUAGUA   1425 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0303E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174655.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:1402   AGGUUUUGUUUGGGUACUCUAGUA   1425 Target Full Sequence	1.5	Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), mRNA	NA	coding protein	psRNATarget
XM_008660566.2	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:2636   AGGUUUUGUUUGGGUACUCUAGUA   2659 Target Full Sequence	1.5	PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660567.2	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:2667   AGGUUUUGUUUGGGUACUCUAGUA   2690 Target Full Sequence	1.5	PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660568.2	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=||||||||=||||||||||| targets:2695   AGGUUUUGUUUGGGUACUCUAGUA   2718 Target Full Sequence	1.5	PREDICTED: Zea mays Putative SAP DNA-binding domain family protein isoform 1 (LOC100381870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU946601.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||||||||||||||=||||||* targets:457   AGGCUUUGUUUGAGUAUUCUAGUU   480 Target Full Sequence	2.5	Zea mays clone 318501 mRNA sequence	NA	coding protein	psRNATarget
BT062975.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=|||||||||*|||||||||| targets:1184   AGGUUUUGUUUGAUUACUCUAGUA   1207 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013H23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001322054.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=|||||||||*|||||||||| targets:1184   AGGUUUUGUUUGAUUACUCUAGUA   1207 Target Full Sequence	1.5	Zea mays uncharacterized LOC107522024 (LOC107522024), mRNA	NA	coding protein	psRNATarget
HI403316.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   ||||||||||||||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	0.0	Sequence 1441 from Patent EP2074227	NA	coding protein	psRNATarget
JB163777.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   ||||||||||||||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	0.0	Sequence 1441 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235446.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   ||||||||||||||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	0.0	Sequence 1441 from Patent EP2985353	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |*||*||||||||||||||||||| targets:1006   AAGCCUUGUUUGAGUACUCUAGUA   1029 Target Full Sequence	0.0	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |*||*||||||||||||||||||| targets:1303   AAGCCUUGUUUGAGUACUCUAGUA   1326 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403492.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   =||||||||=||||||||||| targets:1   UUUUGUUUGGGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   =||||||||=||||||||||| targets:1   UUUUGUUUGGGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:21   GAAACAAACUCAUGAGAUCAU   1   =||||||||=||||||||||| targets:1   UUUUGUUUGGGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
EU950079.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||||*|*|||||=||||||||||| targets:1540   AGGCCUAGUUUGGGUACUCUAGUA   1563 Target Full Sequence	2.5	Zea mays clone 460377 mRNA sequence	NA	coding protein	psRNATarget
EU946584.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=*|*|||||=||||||||||| targets:435   AGGUCUAGUUUGGGUACUCUAGUA   458 Target Full Sequence	2.5	Zea mays clone 317794 mRNA sequence	NA	coding protein	psRNATarget
NM_001326691.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=*|*|||||||||=||||||| targets:616   AGGUCUAGUUUGAGUAUUCUAGUA   639 Target Full Sequence	2.5	Zea mays membrane protein (LOC100381468), mRNA	NA	coding protein	psRNATarget
EU955100.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=*|*|||||||||=||||||| targets:616   AGGUCUAGUUUGAGUAUUCUAGUA   639 Target Full Sequence	2.5	Zea mays clone 1509994 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=*|*|||||=||||||||||| targets:626   AGGUCUAGUUUGGGUACUCUAGUA   649 Target Full Sequence	2.5	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
XM_020540612.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   |||=*|*|||||||||=||||||| targets:1685   AGGUCUAGUUUGAGUAUUCUAGUA   1708 Target Full Sequence	2.5	PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   *||=|||*|||||*|||||||||| targets:1792   UGGUUUUCUUUGAAUACUCUAGUA   1815 Target Full Sequence	2.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   *||=|||*|||||*|||||||||| targets:1793   UGGUUUUCUUUGAAUACUCUAGUA   1816 Target Full Sequence	2.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ063549.1	ncRNA:24   UCCGAAACAAACUCAUGAGAUCAU   1   ||*|*|*|||||=||||||||||| targets:70   AGACCUAGUUUGGGUACUCUAGUA   93 Target Full Sequence	2.5	TSA: Zea mays contig64671, mRNA sequence	NA	coding protein	psRNATarget