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BaseInfo

ncRNA ID	novel_zma_miR9255
Species	Zea mays
Class	miRNA
Genome position	Chr4:243474161-243474303 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	25
Mature sequence(if miRNA)	119 - ACCGGACUGUCCGGUGUACACCGGU - 143
Stem-loop(if miRNA)	--       U                UCA          ---CUCCAA   A    G CCU    AA    CC   ACCGGAC GUCCGGUGUACACCGG   GUGUCCGGUG         GGA GAGC G   CAGG  CUCG  A   ||||||| ||||||||||||||||   ||||||||||         ||| |||| |   ||||  ||||  G   UGGCCUG CAGGCCACGUGUGGCC   UACAGGCCAC         CCU UUCG C   GUUU  GGGC  C UG       U                -UG          UUAAUAUCG   G    G AAC    AA    UU
Stem-loop sequence	ACCGGACUGUCCGGUGUACACCGGUCAGUGUCCGGUGCUCCAAGGAAGAGCGGCCUCAGGAACUCGCCAGCUUCGGGAAUUUGCAACGGCUUGUCCGCUAUAAUUCACCGGACAUGUCCGGUGUGCACCGGACUGUCCGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409351.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||||||||||||||||||| targets:28   UCCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	0.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||||||||||||||||||| targets:28   UCCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	0.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
JB169812.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||||||||||||||||||| targets:28   UCCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	0.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
EU950973.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=|||||||||||||||| targets:180   UCCGGUGUGCACCGGACAGUCCGGU   204 Target Full Sequence	1.0	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:25   UGGCCACAUGUGGCCUGU-CAGGCCA   1   *|||||||||||||||||-||||||| targets:9   UCCGGUGUACACCGGACAUGUCCGGU   34 Target Full Sequence	3.0	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
JB169569.1	ncRNA:25   UGGCCACAUGUGGCCUGU-CAGGCCA   1   *|||||||||||||||||-||||||| targets:9   UCCGGUGUACACCGGACAUGUCCGGU   34 Target Full Sequence	3.0	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
HI409108.1	ncRNA:25   UGGCCACAUGUGGCCUGU-CAGGCCA   1   *|||||||||||||||||-||||||| targets:9   UCCGGUGUACACCGGACAUGUCCGGU   34 Target Full Sequence	3.0	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
EU948808.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:522   UCCGGUGUACACCGGACUGUCCGGU   546 Target Full Sequence	1.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:766   UCCGGUGUGCACCGGACUGUCCGGU   790 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:718   UCCGGUGUACACCGGACUGUCCGGU   742 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT069634.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:718   UCCGGUGUACACCGGACUGUCCGGU   742 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
HI410048.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:107   UCCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
JB170509.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:107   UCCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:107   UCCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.0	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
JB170471.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:115   UCCGGUGUACACCGGACUGUCCGGU   139 Target Full Sequence	1.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
HI410010.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:115   UCCGGUGUACACCGGACUGUCCGGU   139 Target Full Sequence	1.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:115   UCCGGUGUACACCGGACUGUCCGGU   139 Target Full Sequence	1.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
BT069667.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1508   UCCGGUGUGCACCGGACUGUCCGGU   1532 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT069667.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1752   UCCGGUGUGCACCGGACUGUCCGGU   1776 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1508   UCCGGUGUGCACCGGACUGUCCGGU   1532 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1752   UCCGGUGUGCACCGGACUGUCCGGU   1776 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:468   UCCGGUGCACACCGGACAGUCCGGU   492 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:598   UCCGGUGCACACCGGACAGUCCGGU   622 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:722   UCCGGUGCACCACCGGACAGUCCGGU   747 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:740   UCCGGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   ==|||-||=|||||||||||||||| targets:584   GUCGG-GUGCACCGGACAGUCCGGU   607 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:620   UCCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:734   UCCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:837   UCCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:620   UCCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:734   UCCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:837   UCCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||||||||||||*||||||| targets:825   UCCGGUGUACACCGGACUGUCCGGU   849 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1000   UCCGGUGUGCACCGGACUGUCCGGU   1024 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
JB169740.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:107   UCCGGUGUGCACCGGACUGUCCGGU   131 Target Full Sequence	2.5	Sequence 7404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241409.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:107   UCCGGUGUGCACCGGACUGUCCGGU   131 Target Full Sequence	2.5	Sequence 7404 from Patent EP2985353	NA	coding protein	psRNATarget
HI409279.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:107   UCCGGUGUGCACCGGACUGUCCGGU   131 Target Full Sequence	2.5	Sequence 7404 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:712   UCCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:712   UCCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:281   UCCGGUGCACACCGGACAGUCCGGU   305 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   ==|||-||=|||||||||||||||| targets:136   GUCGG-GUGCACCGGACAGUCCGGU   159 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:597   UCCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:695   UCCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:798   UCCGGUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   |=|||-|*=|||||||||||||||| targets:483   AUCGG-GCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:597   UCCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:695   UCCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:798   UCCGGUGCACCACCGGACAGUCCGGU   823 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   |=|||-|*=|||||||||||||||| targets:483   AUCGG-GCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:445   UCCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:559   UCCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:661   UCCGGUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:445   UCCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:559   UCCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:661   UCCGGUGCACCACCGGACAGUCCGGU   686 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:407   UCCGGUGCACACCGGACAGUCCGGU   431 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   **|||||*||||||||||||||||| targets:293   UACGGUGCACACCGGACAGUCCGGU   317 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *|=||||*||-||||||||||||||| targets:531   UCUGGUGCACCACCGGACAGUCCGGU   556 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:1397   UCCGGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:4492   UCCGGUGCACACCGGACAGUCCGGU   4516 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||||||||||||||| targets:4607   UCCGGUGCACACCGGACAGUCCGGU   4631 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:4709   UCCGGUGCACCACCGGACAGUCCGGU   4734 Target Full Sequence	3.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EU964336.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=|||||=||||||||*||||||| targets:569   UCUGGUGUGCACCGGACUGUCCGGU   593 Target Full Sequence	2.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU964665.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:891   UCCGGUGUGCACCGGACUGUCCGGU   915 Target Full Sequence	2.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964665.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1101   UCCGGUGUGCACCGGACUGUCCGGU   1125 Target Full Sequence	2.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:871   UCCGGUGUGCACCGGACUGUCCGGU   895 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1081   UCCGGUGUGCACCGGACUGUCCGGU   1105 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
BT070124.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:871   UCCGGUGUGCACCGGACUGUCCGGU   895 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1081   UCCGGUGUGCACCGGACUGUCCGGU   1105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT054327.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1447   UCCGGUGUGCACCGGACUGUCCGGU   1471 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:1447   UCCGGUGUGCACCGGACUGUCCGGU   1471 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
EZ079086.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:49   UCCGGUGUGCACCGGACUGUCCGGU   73 Target Full Sequence	2.5	TSA: Zea mays contig14725, mRNA sequence	NA	coding protein	psRNATarget
EZ049532.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:48   UCCGGUGUGCACCGGACUGUCCGGU   72 Target Full Sequence	2.5	TSA: Zea mays contig50650, mRNA sequence	NA	coding protein	psRNATarget
BT019242.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:633   UCUGG-GUGCACCGGACUGUCCGGU   656 Target Full Sequence	2.5	Zea mays clone Contig915.F mRNA sequence	NA	coding protein	psRNATarget
BT066975.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:2164   UCUGG-GUGCACCGGACUGUCCGGU   2187 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:2164   UCUGG-GUGCACCGGACUGUCCGGU   2187 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget
EU971710.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:217   UCCGGUGUGCACCGGACUGUCCGGU   241 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|||||||=||||||||*||||||| targets:412   UCCGGUGUGCACCGGACUGUCCGGU   436 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||=|||||||||||| targets:531   UCCGGUGCACACUGGACAGUCCGGU   555 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:645   UCCGGUGAACCACCGGACAGUCCGGU   670 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*||||=|||||||||||| targets:2653   UCCGGUGCACACUGGACAGUCCGGU   2677 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||||||||=||| targets:2767   UCCGGUGCACACCGGACAGUCUGGU   2791 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
JB169399.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
HI408938.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
HI410183.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
HI409038.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB169499.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
JB170644.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI409440.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
JB169901.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCGGU   53 Target Full Sequence	3.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:25   UGGCCACA-UGUGGCCUGUCAGGCCA   1   *||||||*-||||||||||||||||| targets:92   UCCGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	3.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:25   UGGCCAC-AUGUGGCCUGUCAGGCCA   1   *||||||-|*|||||||||||||||| targets:678   UCCGGUGCUUCACCGGACAGUCCGGU   703 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:25   UGGCCACA-UGUGGCCUGUCAGGCCA   1   *||||||*-||||||||||||||||| targets:795   UCCGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:25   UGGCCACA-UGUGGCCUGUCAGGCCA   1   *|||*||*-||||||||||||||||| targets:693   UCCGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *||||||*||-||||||||||||||| targets:848   UCCGGUGCACCACCGGACAGUCCGGU   873 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||*||||||||| targets:609   UCCGGUGCACACCGGUCAGUCCGGU   633 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
HI409836.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||||*||||||| targets:33   UCCGGUGCACACCGGACUGUCCGGU   57 Target Full Sequence	2.5	Sequence 7961 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241966.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||||*||||||| targets:33   UCCGGUGCACACCGGACUGUCCGGU   57 Target Full Sequence	2.5	Sequence 7961 from Patent EP2985353	NA	coding protein	psRNATarget
JB170297.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||||*||||||| targets:33   UCCGGUGCACACCGGACUGUCCGGU   57 Target Full Sequence	2.5	Sequence 7961 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:25   UGGC-CAC-AUGUGGCCUGUCAGGCCA   1   ==||-|||-|=|||||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:25   UGGC-CAC-AUGUGGCCUGUCAGGCCA   1   ==||-|||-|=|||||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:25   UGGC-CAC-AUGUGGCCUGUCAGGCCA   1   ==||-|||-|=|||||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	3.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *|=||||*||-||||||||||||||| targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
JB170370.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *|=||||*||-||||||||||||||| targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
HI409909.1	ncRNA:25   UGGCCACAUG-UGGCCUGUCAGGCCA   1   *|=||||*||-||||||||||||||| targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55 Target Full Sequence	3.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
BT016820.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||||*|||||||||*||||||| targets:201   UCCGGUGCACACCGGACUGUCCGGU   225 Target Full Sequence	2.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT016820.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   ***||*|||||||||||*||||||| targets:4   CGAGGGGUACACCGGACUGUCCGGU   28 Target Full Sequence	1.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
JB170393.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *=*|**|**|||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	3.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *=*|**|**|||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	3.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *=*|**|**|||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	3.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
JB170392.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:12   UCUGG-GUGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 8056 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242061.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:12   UCUGG-GUGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 8056 from Patent EP2985353	NA	coding protein	psRNATarget
HI409931.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *|=||-||=||||||||*||||||| targets:12   UCUGG-GUGCACCGGACUGUCCGGU   35 Target Full Sequence	2.5	Sequence 8056 from Patent EP2074227	NA	coding protein	psRNATarget
BT018479.1	ncRNA:25   UGGCCACAUGUGGCCUGUCAGGCCA   1   *||||*||*||||||||*||||||| targets:43   UCCGGCGUUCACCGGACUGUCCGGU   67 Target Full Sequence	2.5	Zea mays clone EL01N0424B06.d mRNA sequence	NA	coding protein	psRNATarget