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BaseInfo

ncRNA ID novel_zma_miR9252
Species Zea mays
Class miRNA
Genome position Chr4:240825044-240825200 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR4237223;SRR4237224;SRR4237226
Length 24
Mature sequence(if miRNA) 134 - AUUAGUCCCUAGAAACCAAAUACC - 157
Stem-loop(if miRNA) --                      G        AUU         A           AU       C         AAC
  UGUUUGGUUUCUAGGGACUAAU UUUAGUCC   CAUUUUAUU CAUUUUAGUUU  AAAUUGU AAAUAUAGA   U
  |||||||||||||||||||||| ||||||||   ||||||||| |||||||||||  ||||||| |||||||||
  AUAAACCAAAGAUCCCUGAUUA AAAUCAGG   GUAAAAUAA GUAAAAUCAAG  UUUAACG UUUAUAUCU   A
CC                      -        GAU         G           AU       C         AAA
Stem-loop sequence UGUUUGGUUUCUAGGGACUAAUGUUUAGUCCAUUCAUUUUAUUACAUUUUAGUUUAUAAAUUGUCAAAUAUAGAAACUAAAAUCUAUAUUUCGCAAUUUUAGAACUAAAAUGGAAUAAAAUGUAGGGACUAAAAUUAGUCCCUAGAAACCAAAUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545045.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1921   GGUGUUUGGUUUCUAGGGACUAAU   1944

0.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550311.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:2446   GGUGUUUGGUUUCUAGGGACUAAU   2469

0.0 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA NA coding protein psRNATarget
XM_020542419.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:2143   GGUGUUUGGUUUCUAGGGACUAAU   2166

0.0 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1540   GGUGUUUGGUUUCUAGGGACUAAU   1563

0.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
BT085047.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1192   GGUGUUUGGUUUCUAGGGACUAAU   1215

0.0 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
EU956227.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1241   GGUGUUUGGUUUCUAGGGACUAAU   1264

0.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:919   GGUGUUUGGUUUCUAGGGACUAAU   942

0.0 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:971   GGUGUUUGGUUUCUAGGGACUAAU   994

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168

0.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=||||||||||*|||||||||
targets:1040   GAUGUUUGGUUUCUCGGGACUAAU   1063

1.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1154   GGUGUUUGGUUUCUAGGGACUAAU   1177

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1148   GGUGUUUGGUUUCUAGGGACUAAU   1171

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1145   GGUGUUUGGUUUCUAGGGACUAAU   1168

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1136   GGUGUUUGGUUUCUAGGGACUAAU   1159

0.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
BT088358.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161

0.0 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
NM_001313850.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1138   GGUGUUUGGUUUCUAGGGACUAAU   1161

0.0 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837

0.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:814   GGUGUUUGGUUUCUAGGGACUAAU   837

0.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:551   GGUGUUUGGUUUCUAGGGACUAAU   574

0.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
EZ052166.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:751   GGUGUUUGGUUUCUAGGGACUAAU   774

0.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EU942443.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:464   GGUGUUUGGUUUCUAGGGACUAAU   487

0.0 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
JB163501.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

0.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

0.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
HI403040.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:3   GGUGUUUGGUUUCUAGGGACUAAU   26

0.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
HI403052.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403041.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
HI403055.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163516.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
JB163502.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:1   GGUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
LQ235177.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

0.0 Sequence 1172 from Patent EP2985353 NA coding protein psRNATarget
JB163508.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

0.0 Sequence 1172 from Patent EP2559767 NA coding protein psRNATarget
HI403047.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||||||||||
targets:59   GGUGUUUGGUUUCUAGGGACUAAU   82

0.0 Sequence 1172 from Patent EP2074227 NA coding protein psRNATarget
NM_001174508.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2280   GGUGUUUGGUUUUUAGGGACUAAU   2303

1.5 Zea mays hypothetical protein (LOC100381696), mRNA NA coding protein psRNATarget
BT062019.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2280   GGUGUUUGGUUUUUAGGGACUAAU   2303

1.5 Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds NA coding protein psRNATarget
XM_008674864.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2221   GGUGUUUGGUUUUUAGGGACUAAU   2244

1.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008682706.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2254   GGUGUUUGGUUUUUAGGGACUAAU   2277

1.5 PREDICTED: Zea mays protein phosphatase 2C (LOC100286089), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2071   GGUGUUUGGUUUUUAGGGACUAAU   2094

1.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2071   GGUGUUUGGUUUUUAGGGACUAAU   2094

1.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
BT064233.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:2077   GGUGUUUGGUUUUUAGGGACUAAU   2100

1.5 Zea mays full-length cDNA clone ZM_BFc0150L11 mRNA, complete cds NA coding protein psRNATarget
XM_020549827.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:1846   GGUGUUUGGUUUUUAGGGACUAAU   1869

1.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA NA coding protein psRNATarget
EZ111881.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||=|||||||||||
targets:83   GGUGUUUGGUUUUUAGGGACUAAU   106

1.5 TSA: Zea mays contig47542, mRNA sequence NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:3564   GGAUGUUUGGUUUCUAGGGACUAAU   3588

0.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:3527   GGAUGUUUGGUUUCUAGGGACUAAU   3551

0.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:3477   GGAUGUUUGGUUUCUAGGGACUAAU   3501

0.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:3402   GGAUGUUUGGUUUCUAGGGACUAAU   3426

0.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:558   GGAUGUUUGGUUUCUAGGGACUAAU   582

0.0 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||||||||||
targets:3   GGAUGUUUGGUUUCUAGGGACUAAU   27

0.0 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
XM_008654984.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:2905   GGUGUUUGGUUUGUAGGGACUAAU   2928

1.5 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CCA---UAAACCAAAGAUCCCUGAUUA   1
  |||---=||||||||||||||||||||
targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956

0.0 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   CCA---UAAACCAAAGAUCCCUGAUUA   1
  |||---=||||||||||||||||||||
targets:1930   GGUCAUGUUUGGUUUCUAGGGACUAAU   1956

0.0 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
EU956677.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:2011   GGUGUUUGGUUUCUAGAGACUAAU   2034

1.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008656457.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||*||||||||
targets:1644   GGUGUUUGGUUUCUAAGGACUAAU   1667

1.5 PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA NA coding protein psRNATarget
BT083492.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:648   GGUGUUUGGUUUAUAGGGACUAAU   671

1.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
EU957896.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:1242   GGUGUUUGGUUUAUAGGGACUAAU   1265

1.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
BT055601.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=*|||||||||||||||||||
targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809

0.0 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=*|||||||||||||||||||
targets:786   GGUGCUUGGUUUCUAGGGACUAAU   809

0.0 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
XM_008655999.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1163   GGUGUUUGGUUUCUAGGUACUAAU   1186

1.5 PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001136807.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1222   GGUGUUUGGUUUCUAGGUACUAAU   1245

1.5 Zea mays Protein LIKE COV 2 (LOC100191373), mRNA NA coding protein psRNATarget
BT033446.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1222   GGUGUUUGGUUUCUAGGUACUAAU   1245

1.5 Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186

1.5 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186

1.5 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
BT087555.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1176   GGUGUUUGGUUUCUAGGUACUAAU   1199

1.5 Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds NA coding protein psRNATarget
BT065747.2
ncRNA:24   CCA---UAAACCAAAGAUCCCUGAUUA   1
  |||---=||||||||||||||||||||
targets:760   GGUCAUGUUUGGUUUCUAGGGACUAAU   786

0.0 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
EU962491.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1122   GGUGUUUGGUUUCUAGGUACUAAU   1145

1.5 Zea mays clone 243115 mRNA sequence NA coding protein psRNATarget
BT039671.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:1062   GGUGUUUGGUUUCUAGGUACUAAU   1085

1.5 Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds NA coding protein psRNATarget
BT088053.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:804   GGUGUUUGGUUUCUAGGUACUAAU   827

1.5 Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds NA coding protein psRNATarget
XM_008676145.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||*||||||||
targets:829   GGUGUUUGGUUUCUAUGGACUAAU   852

1.5 PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:43   GGUGUUUGGUUUCUAGUGACUAAU   66

1.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
EZ061563.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*|||||||||||
targets:319   GGUGUUUGGUUUAUAGGGACUAAU   342

1.5 TSA: Zea mays contig62685, mRNA sequence NA coding protein psRNATarget
LQ235087.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2985353 NA coding protein psRNATarget
JB163418.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2559767 NA coding protein psRNATarget
HI402957.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1082 from Patent EP2074227 NA coding protein psRNATarget
HI406737.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4862 from Patent EP2074227 NA coding protein psRNATarget
HI406740.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4865 from Patent EP2074227 NA coding protein psRNATarget
LQ238870.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4865 from Patent EP2985353 NA coding protein psRNATarget
JB167201.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4865 from Patent EP2559767 NA coding protein psRNATarget
LQ238867.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4862 from Patent EP2985353 NA coding protein psRNATarget
JB167198.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=|||||||||||||*||||||
targets:3   GGUGUUUGGUUUCUAGGUACUAAU   26

1.5 Sequence 4862 from Patent EP2559767 NA coding protein psRNATarget
HI403095.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2074227 NA coding protein psRNATarget
LQ235225.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2985353 NA coding protein psRNATarget
JB163556.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||||||*|||||||
targets:3   GGUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1220 from Patent EP2559767 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=||||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
JB163511.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=||||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
HI403050.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=||||||||||||||||||||
targets:1   GAUGUUUGGUUUCUAGGGACUAAU   24

0.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=|||||||*||||||||||||
targets:2961   AGUGUUUGGUUACUAGGGACUAAU   2984

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=|||||||*||||||||||||
targets:2572   AGUGUUUGGUUACUAGGGACUAAU   2595

1.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
EU957463.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=|||||||||||||||||||*
targets:1861   GAUGUUUGGUUUCUAGGGACUAAA   1884

1.0 Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds NA coding protein psRNATarget
NM_001154575.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |*|=|||||||||||||||||||*
targets:1860   GAUGUUUGGUUUCUAGGGACUAAA   1883

1.0 Zea mays uncharacterized LOC100281656 (si605087c09), mRNA NA coding protein psRNATarget
BT084832.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=|||||||*||||||||||||
targets:501   AGUGUUUGGUUACUAGGGACUAAU   524

1.5 Zea mays full-length cDNA clone ZM_BFb0189L01 mRNA, complete cds NA coding protein psRNATarget
EU967664.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*||||||||||*
targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*||||||||||*
targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=||||||||*|||||||||||
targets:810   AGUGUUUGGUUUAUAGGGACUAAU   833

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
HI402994.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*||||||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*||||||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||||||*||||||||||*
targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24

2.5 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
XM_008655750.2
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=|||||||||||*||||||||
targets:2413   GGAUGUUUGGUUUCUAAGGACUAAU   2437

1.5 PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||*|||||||||||
targets:141   GGAUGUUUGGUUUGUAGGGACUAAU   165

1.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
XM_008675552.2
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||*|||||||||||
targets:1293   GGAUGUUUGGUUUAUAGGGACUAAU   1317

1.5 PREDICTED: Zea mays LOB domain-containing protein 40 (LOC103649851), mRNA NA coding protein psRNATarget
HI406713.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||*|||||||||||
targets:16   GGAUGUUUGGUUUGUAGGGACUAAU   40

1.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||*|||||||||||
targets:16   GGAUGUUUGGUUUGUAGGGACUAAU   40

1.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||*|||||||||||
targets:16   GGAUGUUUGGUUUGUAGGGACUAAU   40

1.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ235125.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||*|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
HI402995.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||*|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
JB163456.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=||||||||||||*|||||||
targets:2   GGAUGUUUGGUUUCUAGUGACUAAU   26

1.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
XM_020542449.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=||||*|||=|||||||||||
targets:4589   UGUGUUUGAUUUUUAGGGACUAAU   4612

2.5 PREDICTED: Zea mays uncharacterized LOC103635907 (LOC103635907), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542450.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=||||*|||=|||||||||||
targets:4567   UGUGUUUGAUUUUUAGGGACUAAU   4590

2.5 PREDICTED: Zea mays uncharacterized LOC103635907 (LOC103635907), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547054.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||*|||*|||||||||||
targets:291   GGUGUUUGCUUUGUAGGGACUAAU   314

2.5 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547055.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  |||=||||*|||*|||||||||||
targets:289   GGUGUUUGCUUUGUAGGGACUAAU   312

2.5 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA NA coding protein psRNATarget
JB163522.1
ncRNA:23   CAU-AAACCAAAGAUCCCUGAUUA   1
  ||=-|||*||||||||||||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

1.0 Sequence 1186 from Patent EP2559767 NA coding protein psRNATarget
LQ235191.1
ncRNA:23   CAU-AAACCAAAGAUCCCUGAUUA   1
  ||=-|||*||||||||||||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

1.0 Sequence 1186 from Patent EP2985353 NA coding protein psRNATarget
HI403061.1
ncRNA:23   CAU-AAACCAAAGAUCCCUGAUUA   1
  ||=-|||*||||||||||||||||
targets:1   GUGGUUUAGUUUCUAGGGACUAAU   24

1.0 Sequence 1186 from Patent EP2074227 NA coding protein psRNATarget
EU946945.1
ncRNA:24   CCAUAAACCAAAGAUCCCUGAUUA   1
  *||=|||*||||||||*|||||||
targets:568   AGUGUUUAGUUUCUAGUGACUAAU   591

2.5 Zea mays clone 325236 mRNA sequence NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=|||*||||||||*|||||||
targets:1478   GGAUGUUUUGUUUCUAGAGACUAAU   1502

2.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
AY104678.1
ncRNA:24   CC-AUAAACCAAAGAUCCCUGAUUA   1
  ||-|=|||*||||||||*|||||||
targets:1467   GGAUGUUUUGUUUCUAGAGACUAAU   1491

2.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
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