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BaseInfo

ncRNA ID	novel_zma_miR9250
Species	Zea mays
Class	miRNA
Genome position	Chr4:205103255-205103372 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - GUUUGGUUUGUGACUAACUGUGCC - 24
Stem-loop(if miRNA)	--           -GA      G   C         -------------     A     CG    A   GUUUGGUUUGU   CUAACU UGC ACAUUUUGU             UUAAG UUAGU  UUUC A   |||||||||||   |||||| ||| |||||||||             ||||| |||||  ||||   UAAACCAAGCG   GAUUGA AUG UGUGAAACG             AAUUC AAUCA  AAAG U UA           ACG      -   A         AAUUGAAAACAUA     C     -A    U
Stem-loop sequence	GUUUGGUUUGUGACUAACUGUGCCACAUUUUGUUUAAGAUUAGUCGUUUCAAUUGAAAAACUAACCUUAAAUACAAAAGUUAAGCAAAGUGUAGUAAGUUAGGCAGCGAACCAAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001150092.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||=|*|||||||=||||||||| targets:1798   GGCAUAUUUAGUCAUAAACCAAAC   1821 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||=|*|||||||=||||||||| targets:1798   GGCAUAUUUAGUCAUAAACCAAAC   1821 Target Full Sequence	2.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||=|*|||||||=||||||||| targets:1728   GGCAUAUUUAGUCAUAAACCAAAC   1751 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||||*||||*|||||||||||| targets:1420   GGCACAUUUAGCCACAAACCAAAC   1443 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||||*||||*|||||||||||| targets:1403   GGCACAUUUAGCCACAAACCAAAC   1426 Target Full Sequence	2.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   ||||||*||||*|||||||||||| targets:936   GGCACAUUUAGCCACAAACCAAAC   959 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   CCGUGUCAAUCAGU-GUUUGGUUUG   1   ||||-|||||||||-|||||||||| targets:1250   GGCA-AGUUAGUCAUCAAACCAAAC   1273 Target Full Sequence	3.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   CCGUGUCAAUCAGU-GUUUGGUUUG   1   ||||-|||||||||-|||||||||| targets:1772   GGCA-AGUUAGUCAUCAAACCAAAC   1795 Target Full Sequence	3.0	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   |||=||*||||*|||||||||||| targets:988   GGCGCAAUUAGCCACAAACCAAAC   1011 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   CCGUGUCAAUCAGU-GUUUGGUUUG   1   *|===|||||||||-|||||||||| targets:235   AGUGUAGUUAGUCAUCAAACCAAAC   259 Target Full Sequence	3.0	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   CCGU-------GUCAAUCAGUGUUUGGUUUG   1   ||||-------|||||||*|||||||||||| targets:2648   GGCAAAGUGAGCAGUUAGCCACAAACCAAAC   2678 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   |*||||*||||*|||||||||||| targets:880   GACACAUUUAGCCACAAACCAAAC   903 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   CCGUGUCAAUCAGUGUUUGGUUUG   1   |*||||*||||*|||||||||||| targets:1578   GACACAUUUAGCCACAAACCAAAC   1601 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EZ091125.1	ncRNA:24   CCGUGUCAAUCAGU-GUUUGGUUUG   1   *|=|-|||||||||-|||||||||| targets:52   AGUA-AGUUAGUCAUCAAACCAAAC   75 Target Full Sequence	3.0	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
NM_001158271.1	ncRNA:24   CCGU----GUCAAUCAGUGUUUGGUUUG   1   ||*|----|||||||*|||||||||||| targets:932   GGGAGUUUCAGUUAGGCACAAACCAAAC   959 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285378 (AY107414), mRNA	NA	coding protein	psRNATarget
EU972077.1	ncRNA:24   CCGU----GUCAAUCAGUGUUUGGUUUG   1   ||*|----|||||||*|||||||||||| targets:932   GGGAGUUUCAGUUAGGCACAAACCAAAC   959 Target Full Sequence	1.5	Zea mays clone 374513 uncharacterized protein UPF0114 mRNA, complete cds	NA	coding protein	psRNATarget