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BaseInfo

ncRNA ID novel_zma_miR9248
Species Zea mays
Class miRNA
Genome position Chr4:183647363-183647428 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 23
Mature sequence(if miRNA) 1 - GACUAUAGUGUCGUGCCUGGGCC - 23
Stem-loop(if miRNA) --    AUA        C   -   C  C  CU  
  GACU   GUGUCGUG CUG GGC GC AU  CGA
  ||||   |||||||| ||| ||| || ||  ||C
  UUGA   UACAGUAC GAC CCG CG UA  GCU
CA    ---        A   A   C  -  AU  
Stem-loop sequence GACUAUAGUGUCGUGCCUGGGCCGCCAUCUCGACUCGUAAUGCCGCCACAGACAUGACAUAGUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551324.1
ncRNA:23   CCGGGUCCGUGCUGUGAUAUCAG   1
  |||||||||||||||||||||*|
targets:240   GGCCCAGGCACGACACUAUAGCC   262

1.5 PREDICTED: Zea mays uncharacterized LOC100216848 (IDP386), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020552594.1
ncRNA:23   CCGGGUCCGUGCUGUGAUAUCAG   1
  |||||||||||*||||||||||*
targets:3483   GGCCCAGGCACUACACUAUAGUG   3505

2.5 PREDICTED: Zea mays U-box domain-containing protein 26-like (LOC103655466), mRNA NA coding protein psRNATarget