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BaseInfo

ncRNA ID novel_zma_miR9246
Species Zea mays
Class miRNA
Genome position Chr4:174069153-174069222 [+]
Reference genome RefGen_v4
Source SRR4237222;SRR4237224
Length 24
Mature sequence(if miRNA) 47 - UUGGCAAGCAGAACGGAACCGCUC - 70
Stem-loop(if miRNA) --    C   A    A    -     ----A      C
  GCGG UUC UUCU GUUU CUAAG     AUUGAG C
  |||| ||| |||| |||| |||||     ||||||
  CGCC AGG AAGA CGAA GGUUU     UAACUU A
CU    A   C    -    C     GUGUC      U
Stem-loop sequence GCGGCUUCAUUCUAGUUUCUAAGAAUUGAGCCAUUUCAAUCUGUGUUUGGCAAGCAGAACGGAACCGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086504.1
ncRNA:24   CUCG-CCAAGGCAAGACGAACGGUU   1
  *|||-||*||=||||||||||||||
targets:515   AAGCAGGGUCUGUUCUGCUUGCCAA   539

2.0 Zea mays full-length cDNA clone ZM_BFc0173L14 mRNA, complete cds NA coding protein psRNATarget
NM_001196524.1
ncRNA:24   CUCG-CCAAGGCAAGACGAACGGUU   1
  *|||-||*||=||||||||||||||
targets:515   AAGCAGGGUCUGUUCUGCUUGCCAA   539

2.0 Zea mays glycine/proline-rich family protein (LOC100501885), mRNA NA coding protein psRNATarget