Search result

BaseInfo

ncRNA ID	novel_zma_miR9245
Species	Zea mays
Class	miRNA
Genome position	Chr4:171683940-171684075 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - UUAGGGGCUGUUUGGUUCGUGGCU - 24
Stem-loop(if miRNA)	--UU               -C   G    AUG          -------------              CG   G     AGGGGCUGUUUGGUU  GUG CUAA   UGCCACACUU             UGCCUAAGGUUAGU  UUC A     |||||||||||||||  ||| ||||   ||||||||||             ||||||||||||||  ||| A     UUCCCGACAAACCAA  UAC GAUU   ACGGUGUGAA             ACGGAUUCCAAUCA  AAG U UGAU               AC   G    -GA          ACAGAUUGAAAAG              AG   U
Stem-loop sequence	UUAGGGGCUGUUUGGUUCGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGACAAAGUGUGGCAAGUUAGGCAUCAAACCAAACAGCCCUUUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ110937.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||||||||||||||||||||||* targets:142   AGCCACGAACCAAACAGCCCCUAU   165 Target Full Sequence	1.0	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGA-UU   1   ||||||||||||||||||||||-|| targets:800   AGCCACGAACCAAACAGCCCCUUAA   824 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGA-UU   1   ||||||||||||||||||||||-|| targets:800   AGCCACGAACCAAACAGCCCCUUAA   824 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGA-UU   1   ||||||||||||||||||||||-|| targets:800   AGCCACGAACCAAACAGCCCCUUAA   824 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||||||||||||||||*|||||| targets:713   AGCCACGAACCAAACAGACCCUAA   736 Target Full Sequence	1.5	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||||||||||||||||*|||||| targets:696   AGCCACGAACCAAACAGACCCUAA   719 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||||||||||||||||*|||||| targets:731   AGCCACGAACCAAACAGACCCUAA   754 Target Full Sequence	1.5	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   ||||||||||||||||||||||*| targets:2765   AGCCACGAACCAAACAGCCCCUUA   2788 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||||||||||||||||*|||||= targets:2493   AGCCACGAACCAAACAGGCCCUAG   2516 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   ||||||*||||||||||||||||* targets:1574   AGCCACCAACCAAACAGCCCCUAC   1597 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||=||*||||||||||||||||= targets:1021   AGCUACAAACCAAACAGCCCCUAG   1044 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||=||*||||||||||||||||= targets:1509   AGCUACAAACCAAACAGCCCCUAG   1532 Target Full Sequence	2.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   |||=||*||||||||||||||||= targets:1519   AGCUACAAACCAAACAGCCCCUAG   1542 Target Full Sequence	2.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   ||||||*||||||||||*|||||| targets:997   AGCCACAAACCAAACAGGCCCUAA   1020 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   ||||||*||||||||||*|||||| targets:1587   AGCCACAAACCAAACAGGCCCUAA   1610 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EZ110795.1	ncRNA:24   UCG-GUGCUUGGUUUGUCGGGGAUU   1   ||=-==|||||||||||||||=||| targets:42   AGUGUGCGAACCAAACAGCCCUUAA   66 Target Full Sequence	1.5	TSA: Zea mays contig46456, mRNA sequence	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGA-UU   1   ||*=||||||||||||||||||-|| targets:489   AGAUACGAACCAAACAGCCCCUUAA   513 Target Full Sequence	3.0	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_008662699.2	ncRNA:24   UC-GGUGCUUGGUUUGUCGGGGAUU   1   ||-|||||*|||||||||||||||= targets:2590   AGUCCACGCACCAAACAGCCCCUAG   2614 Target Full Sequence	2.0	PREDICTED: Zea mays scarecrow-like protein 34 (LOC103640045), mRNA	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   =||*=|*||||||||||||||||| targets:9   GGCAGCAAACCAAACAGCCCCUAA   32 Target Full Sequence	1.0	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008673397.2	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   =|=*=|*||||||||||||||||| targets:112   GGUAGCAAACCAAACAGCCCCUAA   135 Target Full Sequence	1.0	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
NM_001150646.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   **=|==||||||||||||*||||| targets:862   UUUCGUGAACCAAACAGCACCUAA   885 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276958 (LOC100276958), mRNA	NA	coding protein	psRNATarget
EU965910.1	ncRNA:24   UCGGUGCUUGGUUUGUCGGGGAUU   1   **=|==||||||||||||*||||| targets:862   UUUCGUGAACCAAACAGCACCUAA   885 Target Full Sequence	2.5	Zea mays clone 289922 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   UCGG---UGCUUGGUUUGUCGGGGAUU   1   ||=|---||*|||||||||*||||||| targets:1123   AGUCCCUACAAACCAAACACCCCCUAA   1149 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget