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BaseInfo

ncRNA ID	novel_zma_miR9244
Species	Zea mays
Class	miRNA
Genome position	Chr10:1123126-1123331 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	183 - UACUAGAGUAUUCAAACAAAGCCU - 206
Stem-loop(if miRNA)	--    A      U           UAAA  UAGUUUGGGAGCCAUAAAACCGUAGGCGAUUGGAGGUGAUAGAAUCUCUUUCUUAUUUAAAAUUAAAUAAAAAG   UACU GAGUAU CAAACAAAGCC    GC                                                                          A   |||| |||||| |||||||||||    ||   AUGA CUCAUG GUUUGUUUCGG    AG                                                                          U CU    A      U           ----  UACCCCAUCUUAAACUUAUCAUUUCCGAUCAAACUCUCGGUGUUUUAGCUUUCCCUAACCUCCCCCGAUCUUAG
Stem-loop sequence	UACUAGAGUAUUCAAACAAAGCCUAAAGCUAGUUUGGGAGCCAUAAAACCGUAGGCGAUUGGAGGUGAUAGAAUCUCUUUCUUAUUUAAAAUUAAAUAAAAAGAUGAUUCUAGCCCCCUCCAAUCCCUUUCGAUUUUGUGGCUCUCAAACUAGCCUUUACUAUUCAAAUUCUACCCCAUGAGGCUUUGUUUGUGUACUCAAGUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961632.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||||||||||||=|||||||||| targets:1728   AGGCUUUGUUUGAGUACUCUAGUA   1751 Target Full Sequence	1.5	Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds	NA	coding protein	psRNATarget
EZ080094.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||||||||||||=|||||||||| targets:177   AGGCUUUGUUUGAGUACUCUAGUA   200 Target Full Sequence	1.5	TSA: Zea mays contig15733, mRNA sequence	NA	coding protein	psRNATarget
BT062975.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||=|||||||||*|||||||||| targets:1184   AGGUUUUGUUUGAUUACUCUAGUA   1207 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013H23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001322054.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||=|||||||||*|||||||||| targets:1184   AGGUUUUGUUUGAUUACUCUAGUA   1207 Target Full Sequence	1.5	Zea mays uncharacterized LOC107522024 (LOC107522024), mRNA	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   ||*=||||||||=||||||||||| targets:3290   AGAUUUUGUUUGGAUACUCUAGUA   3313 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   ||*=||||||||=||||||||||| targets:3195   AGAUUUUGUUUGGAUACUCUAGUA   3218 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   ||*=||||||||=||||||||||| targets:3109   AGAUUUUGUUUGGAUACUCUAGUA   3132 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   *||=|||*|||||||||||||||| targets:1793   UGGUUUUCUUUGAAUACUCUAGUA   1816 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   *||=|||*|||||||||||||||| targets:1792   UGGUUUUCUUUGAAUACUCUAGUA   1815 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403316.1	ncRNA:21   GAAACAAACUUAUGAGAUCAU   1   ||||||||||=|||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1441 from Patent EP2074227	NA	coding protein	psRNATarget
JB163777.1	ncRNA:21   GAAACAAACUUAUGAGAUCAU   1   ||||||||||=|||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1441 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235446.1	ncRNA:21   GAAACAAACUUAUGAGAUCAU   1   ||||||||||=|||||||||| targets:1   CUUUGUUUGAGUACUCUAGUA   21 Target Full Sequence	1.5	Sequence 1441 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020540884.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||*||*|||||=||||||||||| targets:3838   AGGGUUAGUUUGGAUACUCUAGUA   3861 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
XM_008662364.2	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   ||||*|*|||||=||||||||||| targets:3113   AGGCCUAGUUUGGAUACUCUAGUA   3136 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384533 (LOC100384533), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543793.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   ||||*|*|||||=||||||||||| targets:2810   AGGCCUAGUUUGGAUACUCUAGUA   2833 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384533 (LOC100384533), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |*||*||||||||=|||||||||| targets:1303   AAGCCUUGUUUGAGUACUCUAGUA   1326 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |*||*||||||||=|||||||||| targets:1006   AAGCCUUGUUUGAGUACUCUAGUA   1029 Target Full Sequence	1.5	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
BT019068.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||=*|*|||||=||||||||||| targets:146   AGGUCUAGUUUGGAUACUCUAGUA   169 Target Full Sequence	2.5	Zea mays clone Contig631.F mRNA sequence	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1631   AGGACUAGUUUGGAUACUCUAGUA   1654 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1618   AGGACUAGUUUGGAUACUCUAGUA   1641 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1597   AGGACUAGUUUGGAUACUCUAGUA   1620 Target Full Sequence	2.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1576   AGGACUAGUUUGGAUACUCUAGUA   1599 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1576   AGGACUAGUUUGGAUACUCUAGUA   1599 Target Full Sequence	2.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1444   AGGACUAGUUUGGAUACUCUAGUA   1467 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
EU960123.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1477   AGGACUAGUUUGGAUACUCUAGUA   1500 Target Full Sequence	2.5	Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds	NA	coding protein	psRNATarget
BT053958.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:1370   AGGACUAGUUUGGAUACUCUAGUA   1393 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
EU944570.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   |||**|*|||||=||||||||||| targets:630   AGGACUAGUUUGGAUACUCUAGUA   653 Target Full Sequence	2.5	Zea mays clone 222723 mRNA sequence	NA	coding protein	psRNATarget
XM_020551404.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **||*|*|||||=||||||||||| targets:2027   CUGCCUAGUUUGGAUACUCUAGUA   2050 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275481 (si606071d07), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551593.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1439   UUGUCUAGUUUGAAUACUCUAGUA   1462 Target Full Sequence	1.0	PREDICTED: Zea mays NAC domain-containing protein 68 (NAC75), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551594.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1418   UUGUCUAGUUUGAAUACUCUAGUA   1441 Target Full Sequence	1.0	PREDICTED: Zea mays NAC domain-containing protein 68 (NAC75), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551595.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1286   UUGUCUAGUUUGAAUACUCUAGUA   1309 Target Full Sequence	1.0	PREDICTED: Zea mays NAC domain-containing protein 68 (NAC75), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU970906.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1234   UUGUCUAGUUUGAAUACUCUAGUA   1257 Target Full Sequence	1.0	Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158011.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1234   UUGUCUAGUUUGAAUACUCUAGUA   1257 Target Full Sequence	1.0	Zea mays NAC domain-containing protein 68 (NAC75), mRNA	NA	coding protein	psRNATarget
DQ246095.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1231   UUGUCUAGUUUGAAUACUCUAGUA   1254 Target Full Sequence	1.0	Zea mays clone 16151 mRNA sequence	NA	coding protein	psRNATarget
DQ245491.1	ncRNA:24   UCCGAAACAAACUUAUGAGAUCAU   1   **|=*|*||||||||||||||||| targets:1230   UUGUCUAGUUUGAAUACUCUAGUA   1253 Target Full Sequence	1.0	Zea mays clone 16115 mRNA sequence	NA	coding protein	psRNATarget