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BaseInfo

ncRNA ID novel_zma_miR9238
Species Zea mays
Class miRNA
Genome position Chr3:24677662-24677771 [-]
Reference genome RefGen_v4
Source SRR4237222;SRR4237223;SRR5099742
Length 24
Mature sequence(if miRNA) 87 - AGAGAAGACUGUAAAUGAUGGAUA - 110
Stem-loop(if miRNA) --AG      C         UG    -------------                A    G
    AGAAGA UGUAAAUGA  GAUA             UAGAGGACGUUGCUGG GAUA U
    |||||| |||||||||  ||||             |||||||||||||||| |||| U
    UCUUCU ACAUUUACU  UUAU             AUCUCCUGCAACGACC CUGU U
AAUA      U         GU    AUCUCUUACUUAA                G    A
Stem-loop sequence AGAGAAGACUGUAAAUGAUGGAUAUAGAGGACGUUGCUGGAGAUAGUUUAUGUCGCCAGCAACGUCCUCUAAAUUCAUUCUCUAUAUUUGUCAUUUACAUUCUUCUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647679.2
ncRNA:24   AUAGGUAGUAAAUGUCAGAAGAGA   1
  ||||||||||||||||||||||||
targets:1636   UAUCCAUCAUUUACAGUCUUCUCU   1659

0.0 PREDICTED: Zea mays serine/threonine-protein kinase OXI1 (LOC103627390), mRNA NA coding protein psRNATarget
EU945347.1
ncRNA:24   AUAGGUAGUAAAUGUCAGAAGAGA   1
  |||||=||||||||||||||||||
targets:303   UAUCCGUCAUUUACAGUCUUCUCU   326

1.0 Zea mays clone 260245 mRNA sequence NA coding protein psRNATarget
EU973786.1
ncRNA:24   AUAGGUAGUAAAUGUCAGAAGAGA   1
  |*|==*||*|||||||||||||||
targets:262   UCUUUCUCUUUUACAGUCUUCUCU   285

2.0 Zea mays clone 414373 mRNA sequence NA coding protein psRNATarget