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BaseInfo

ncRNA ID novel_zma_miR9232
Species Zea mays
Class miRNA
Genome position Chr3:33355328-33355472 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 122 - CACCGGACUGUUCGGUGCACCCGA - 145
Stem-loop(if miRNA) --   G         U        UG         -          G  --------------      U --  A    UG
  GGG GCACCGGAC GUCCGGUG  CACCGGACA UGUCCGGUGU CC              AACGGC C  CC GAUC  C
  ||| ||||||||| ||||||||  ||||||||| |||||||||| ||              |||||| |  || ||||
  CCC CGUGGCUUG CAGGCCAC  GUGGCCUGU ACAGGCCACG GG              UUGUCG G  GG CUGG  A
AG   A         U        GU         G          -  CUAAAGAAAGGAAU      C UC  -    CA
Stem-loop sequence GGGGGCACCGGACUGUCCGGUGUGCACCGGACAUGUCCGGUGUGCCAACGGCUCCCAGAUCUGCAACGGUCGGCUGCGCUGUUUAAGGAAAGAAAUCGGGCACCGGACAGUGUCCGGUGUGCACCGGACUGUUCGGUGCACCCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065201.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  ||||||||||||=|||||||||||
targets:585   UCGGGUGCACCGGACAGUCCGGUG   608

1.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  ||||||||||||=|||||||||||
targets:137   UCGGGUGCACCGGACAGUCCGGUG   160

1.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *=||||||||||=|||||||||||
targets:588   AUGGGUGCACCGGACAGUCCGGUG   611

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   AGC--CCACGUGGCUUGUCAGGCCAC   1
  *||--|||||||||=|||||||||||
targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *=||||||||||=|||||||||||
targets:588   AUGGGUGCACCGGACAGUCCGGUG   611

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:24   AGC--CCACGUGGCUUGUCAGGCCAC   1
  *||--|||||||||=|||||||||||
targets:820   CCGCUGGUGCACCGGACAGUCCGGUG   845

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
LQ242243.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---|||||||||=|||||||||||
targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171

1.5 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
JB170574.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---|||||||||=|||||||||||
targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171

1.5 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
HI410113.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---|||||||||=|||||||||||
targets:145   UCGAGUGGUGCACCGGACAGUCCGGUG   171

1.5 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  |||||*||||||=|||||||||||
targets:496   UCGGGCGCACCGGACAGUCCGGUG   519

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  |||||*||||||=|||||||||||
targets:496   UCGGGCGCACCGGACAGUCCGGUG   519

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  |||||*||||||=|||||||||||
targets:484   UCGGGCGCACCGGACAGUCCGGUG   507

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  |||||*||||||=|||||||||||
targets:484   UCGGGCGCACCGGACAGUCCGGUG   507

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  |||||*||||||=|||||||||||
targets:4378   UCGGGCGCACCGGACAGUCCGGUG   4401

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
EU950973.1
ncRNA:24   AGCC-CACGUGGCUUGUCAGGCCAC   1
  *|||-||||||||=|||||||||||
targets:181   CCGGUGUGCACCGGACAGUCCGGUG   205

1.5 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
BT086229.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*|||||||||=|||||||||||
targets:829   CCUGGUGCACCGGACAGUCCGGUG   852

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
JB169871.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*|||||||||=|||||||||||
targets:92   CCUGGUGCACCGGACAGUCCGGUG   115

1.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*|||||||||=|||||||||||
targets:92   CCUGGUGCACCGGACAGUCCGGUG   115

1.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
HI409410.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*|||||||||=|||||||||||
targets:92   CCUGGUGCACCGGACAGUCCGGUG   115

1.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
BT069074.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*|||||||||=|||||||||||
targets:762   CCUGGUGCACCGGACAGUCCGGUG   785

1.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *||||*||||||=|||||||||||
targets:331   ACGGGCGCACCGGACAGUCCGGUG   354

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *||||*||||||=|||||||||||
targets:331   ACGGGCGCACCGGACAGUCCGGUG   354

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EZ108756.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *=|||*||||||=|||||||||||
targets:145   AUGGGCGCACCGGACAGUCCGGUG   168

2.5 TSA: Zea mays contig44415, mRNA sequence NA coding protein psRNATarget
BT068112.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  ||*||*||||||=|||||||||||
targets:375   UCUGGCGCACCGGACAGUCCGGUG   398

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---||*||||||=|||||||||||
targets:501   UCGCCUGGCGCACCGGACAGUCCGGUG   527

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AGC--CCACGUGGCUUGUCAGGCCAC   1
  *||--||*||||||=|||||||||||
targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---||*||||||=|||||||||||
targets:501   UCGCCUGGCGCACCGGACAGUCCGGUG   527

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   AGC--CCACGUGGCUUGUCAGGCCAC   1
  *||--||*||||||=|||||||||||
targets:598   ACGUUGGCGCACCGGACAGUCCGGUG   623

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
EZ066204.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---||*||||||=|||||||||||
targets:87   UCGCAUGGCGCACCGGACAGUCCGGUG   113

2.5 TSA: Zea mays contig01838, mRNA sequence NA coding protein psRNATarget
BT083610.2
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---||*||||||=|||||||||||
targets:471   UCGCAUGGCGCACCGGACAGUCCGGUG   497

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*||*||||||=|||||||||||
targets:779   CCUGGCGCACCGGACAGUCCGGUG   802

2.5 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
BT066013.2
ncRNA:24   AGCCCACGUGGCUUGUCAGGCCAC   1
  *|*||*||||||=|||||||||||
targets:779   CCUGGCGCACCGGACAGUCCGGUG   802

2.5 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:24   AGC---CCACGUGGCUUGUCAGGCCAC   1
  |||---||*||||||=|||||||||||
targets:2536   UCGACUGGCGCACCGGACAGUCCGGUG   2562

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EZ109126.1
ncRNA:24   AGC--CCACGUGGCUUGUCAGGCCAC   1
  |=|--||*||||||=|||||||||||
targets:172   UUGAUGGCGCACCGGACAGUCCGGUG   197

2.5 TSA: Zea mays contig44785, mRNA sequence NA coding protein psRNATarget
EZ065990.1
ncRNA:22   CCCACGUGGCUUGUCAGGCCAC   1
  *||*||||||=|||||||||||
targets:1   UGGCGCACCGGACAGUCCGGUG   22

2.5 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
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