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BaseInfo

ncRNA ID	ath-miRf10100-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CUCGACCAGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	UG UGA         A AG          -U   G G A GA  A   UACUUGACC C  GGUCGAGUGG  GGU U A G ||  |   ||||||||| |  ||||||||||  ||| | | U UU  U   GUGAGCUGG G  CCAGCUCAUC  CCG A U G   GU -UG         G GA          UU   G G A
Stem-loop sequence	GAUGAUGAUACUUGACCACAGGGUCGAGUGGUGGUGUGAAGUGAUGAGGCCUUCUACUCGACCAGGGGGUCGAGUGGUUUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||||| targets:89   ACCACUCGACCCCCUGGUCGAG   110 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||||| targets:123   ACCACUCGACCCCCUGGUCGAG   144 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGAG   519 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   =||||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   *|=||||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   =||||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGAG   250 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   *|=||||||||||||||||||| targets:180   UCUACUCGACCCCCUGGUCGAG   201 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |=|||||||||||||||||||| targets:1570   AUCACUCGACCCCCUGGUCGAG   1591 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   ===||||*|||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   ===||||*|||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGAG   321 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |==||*|||||||||||||||| targets:582   AUUACYCGACCCCCUGGUCGAG   603 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   *|=|||||||||||*||||||| targets:186   UCUACUCGACCCCCAGGUCGAG   207 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||*|||||||| targets:488   ACCACUCGACCCCGUGGUCGAG   509 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||*|||||||| targets:534   ACCACUCGACCCCAUGGUCGAG   555 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   ||||||||||||||*||||||| targets:1103   ACCACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:22   UGGUGAGCUGGGGGACCAGCUC   1   |||||||||||||*|||||||| targets:1208   ACCACUCGACCCCGUGGUCGAG   1229 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   UGG--UGAGCUGGGGGACCAGCUC   1   |||--||||||||||||||||||| targets:305   ACCUUACUCGACCCCCUGGUCGAG   328 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget